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The map label for this gene is truC [H]

Identifier: 218547690

GI number: 218547690

Start: 284602

End: 285384

Strand: Direct

Name: truC [H]

Synonym: EFER_0270

Alternate gene names: 218547690

Gene position: 284602-285384 (Clockwise)

Preceding gene: 218547689

Following gene: 218547691

Centisome position: 6.2

GC content: 52.62

Gene sequence:

>783_bases
ATGCTGGAAATACTCTACCAGGATGAATGGCTGGTTGCGGTAAATAAACCTTCCGGCTGGCTGGTTCATCGCAGCTGGCT
GGATCGCGACGAGAAAGTGGTGGTCATGCAAACCGTTCGTGACCAGATAGGTCAGCATGTTTTTACTGCTCATCGTCTGG
ACCGTCCAACTTCTGGAGTATTGTTGATGGGATTATCCAGCGAGGCCGGGCGGCTGTTAGCGCAACAGTTTGAACAGCAC
CAAATCCAGAAACGTTACCATGCGATTGTGCGTGGCTGGCTGATGGAAGAAGCAGTGCTGGATTATCCGCTGGTGGAAGA
GCTGGATAAAATCGCCGATAAGTATGCCCGTGAAGATAAAGGCCCACAGCCAGCAGTGACGCAGTATCGCGGTCTGGCGA
CGGTTGAAATGCCAGTAGCGACCGGACGTTACCCGACCACGCGCTACGGCCTGGTGGAGCTGGAGCCGAAAACCGGACGC
AAACATCAGCTTCGCCGACATCTTGCCCATTTGCGTCATCCGATAATTGGTGACAGCAAACATGGCGATTTACGCCAGAA
TCGCAGCGGTGCTGAACATTTTGGCCTCCAGCGCTTAATGCTACATGCCAGTCAGTTGTCATTGACGCATCCTTTTACTG
GCGAGCTGTTGACGATTCATGCCGGGCTGGACGATATCTGGATGCAGGCATTATCACAATTTGGCTGGCGCGGTCTGCTT
CCTGAAAATGAAAGGGTTGAGTTCAGTGGGCCAGCAGTCCAGGATGAAGAGATAAGTTCTTAA

Upstream 100 bases:

>100_bases
CATACTATGAAATGGCGCTGGAAAACGATCATCCTCAGCGGGAGCTGTTACTGGCAGAGCTGCAAAAGCTCGATGCCTTA
TTTGCGGATGATGCCAACTG

Downstream 100 bases:

>100_bases
TCCAGGGAGATAATCCAATGGCGGAAATTGGTATTTTTGTCGGTACGATGTACGGCAATTCACTGTTAGTCGCGGAAGAA
GCCGAAGCAATTCTGACCGC

Product: tRNA pseudouridine synthase C

Products: NA

Alternate protein names: tRNA pseudouridylate synthase C; tRNA-uridine isomerase C [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQH
QIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKYAREDKGPQPAVTQYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGELLTIHAGLDDIWMQALSQFGWRGLL
PENERVEFSGPAVQDEEISS

Sequences:

>Translated_260_residues
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQH
QIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKYAREDKGPQPAVTQYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGELLTIHAGLDDIWMQALSQFGWRGLL
PENERVEFSGPAVQDEEISS
>Mature_260_residues
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQH
QIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKYAREDKGPQPAVTQYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGELLTIHAGLDDIWMQALSQFGWRGLL
PENERVEFSGPAVQDEEISS

Specific function: Responsible for synthesis of pseudouridine from uracil- 65 in transfer RNAs [H]

COG id: COG0564

COG function: function code J; Pseudouridylate synthases, 23S RNA-specific

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pseudouridine synthase rluA family [H]

Homologues:

Organism=Homo sapiens, GI221316667, Length=186, Percent_Identity=33.8709677419355, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI221316663, Length=204, Percent_Identity=31.3725490196078, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI23308689, Length=178, Percent_Identity=29.2134831460674, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI1789155, Length=260, Percent_Identity=96.9230769230769, Blast_Score=513, Evalue=1e-147,
Organism=Escherichia coli, GI1787327, Length=233, Percent_Identity=33.4763948497854, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786244, Length=224, Percent_Identity=35.7142857142857, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788946, Length=237, Percent_Identity=27.8481012658228, Blast_Score=84, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320168, Length=180, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324506, Length=187, Percent_Identity=26.7379679144385, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24583449, Length=186, Percent_Identity=31.7204301075269, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24583447, Length=186, Percent_Identity=31.7204301075269, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24583445, Length=186, Percent_Identity=31.7204301075269, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI19921090, Length=179, Percent_Identity=31.2849162011173, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006224
- InterPro:   IPR006145 [H]

Pfam domain/function: PF00849 PseudoU_synth_2 [H]

EC number: NA

Molecular weight: Translated: 29785; Mature: 29785

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS01129 PSI_RLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV
CCEEEEECCEEEEEECCCCEEEEHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCE
LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKYAREDK
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
GPQPAVTQYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK
CCCCHHHHHCCCEEEEECCCCCCCCCCEECEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGELLTIHAGLDDIWMQALSQFGWRGLL
CCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCC
PENERVEFSGPAVQDEEISS
CCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV
CCEEEEECCEEEEEECCCCEEEEHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCE
LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKYAREDK
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
GPQPAVTQYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK
CCCCHHHHHCCCEEEEECCCCCCCCCCEECEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGELLTIHAGLDDIWMQALSQFGWRGLL
CCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCC
PENERVEFSGPAVQDEEISS
CCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]