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The map label for this gene is rcsF [H]

Identifier: 218547652

GI number: 218547652

Start: 241009

End: 241413

Strand: Reverse

Name: rcsF [H]

Synonym: EFER_0220

Alternate gene names: 218547652

Gene position: 241413-241009 (Counterclockwise)

Preceding gene: 218547653

Following gene: 218547651

Centisome position: 5.26

GC content: 52.84

Gene sequence:

>405_bases
ATGCGTGCTTTACCGATCTGTTTAGTAGCACTCATGCTAAGCGGCTGTTCCATGTTAAGCAGATCCCCTGTCGAACCCGT
TCAAAGCACTGCACCCCAGCCGAAAGCGGAGCCTGCAAAACCGAAAGCACCGCGCGCCGCGCCGGTCCGAATTTATACCA
ATGCAGAAGAATTAGTCGGCAAACCATTCCGCGATCTCGGTGAAGTCAGTGGCGATTCTTGCCAGGCCTCTAATCAGGAC
TCTCCGCCGAGCATTCCAACCGCGCGTAAGCGGATGCAAATCAATGCCTCTAAAATGAAAGCCAATGCGGTATTACTGCA
TAGCTGCGAAGTTACCAGCGGTACGCCAGGCTGCTATCGTCAGGCTGTATGTATCGGTTCTGCGCTTAACATTACGGCGA
AATGA

Upstream 100 bases:

>100_bases
CAATTTGTAATATCATTCAGGACGGGCGCTTGCCCGTCTTGTCATTTTTACAAGCTCCTGATTCAATATTGACGTTTTGA
TCATACATTGAGGAAATACT

Downstream 100 bases:

>100_bases
GCAGTTTCCAGTTCGAGCAAATAGGCGTTATTCGCTCGCCCTATAAAGAAAAATTCGCCGTTCCGCGCCAGCCAGGTCTG
GTAAAAAGCGCCAACGGCGA

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRAAPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQD
SPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK

Sequences:

>Translated_134_residues
MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRAAPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQD
SPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK
>Mature_134_residues
MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRAAPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQD
SPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNITAK

Specific function: Essential component of the Rcs signaling system to promote transcription of the genes for colanic acid capsule synthesis. Together with rcsC, they probably promote the phosphorylation of rcsB [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786394, Length=134, Percent_Identity=99.2537313432836, Blast_Score=270, Evalue=3e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14134; Mature: 14134

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRAAPVRIYTNAEELVG
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHC
KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR
CCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHCCCEEEEEECCCCCCCCHHHH
QAVCIGSALNITAK
HHHHHCCCCCEECC
>Mature Secondary Structure
MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAPRAAPVRIYTNAEELVG
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHC
KPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYR
CCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHCCCEEEEEECCCCCCCCHHHH
QAVCIGSALNITAK
HHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Stimulates colanic acid capsule synthesis [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]