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The map label for this gene is yagA [C]

Identifier: 218533248

GI number: 218533248

Start: 5767281

End: 5768150

Strand: Reverse

Name: yagA [C]

Synonym: Mchl_5378

Alternate gene names: 218533248

Gene position: 5768150-5767281 (Counterclockwise)

Preceding gene: 218533249

Following gene: 218533247

Centisome position: 99.83

GC content: 66.44

Gene sequence:

>870_bases
ATGAACGTCCTAGACGTCTCCGAGCGCCGCGCCTGTCGGGCGCTCGGGCAGCATCGCTCGACGCAGCGCAAGGTGCCGCG
GGGAAGAGAGGATGAGGCCGCGCTGACAGCCGACCTCGTGGAACTGGCTCGCCAGTACGGGCGCTACGGCTACCGGAAGA
TCGGTGCATTGCTGAAGGCGGCGGGCTGGTTCGTCAACGACAAGCGGGTCGAACGGATCTGGCGGCGCGAGGGGCTGAAG
GTCCCGTCTCGGCAGCCCAAGCGCGGCCGCATCTGGGACGGGGATGGTTCCTGCCTGCGATTGCGGGCGGAGCGTCGCGA
TCACGTCTGGTCCTACGACTTTGTCGAAGCCCGCACGCACGAGGGCCGCAAGTTCCGGATGCTGAACGTGGTCGATGAGT
TCACGCGGGAGTGCCTGGCGATCCGCGTCGCACGCAAGCTGAAGGCGGCGGACGTGATCGACGTGCTGTCCGACCTGTTC
ATCCTGCGCGGCGTGCCCGGCCATATCCGCTCGGACAACGGTCCGGAGTTCATCGCCAAGTCCGTGCAGGCCTGGATCAC
CGGTGTCGGCGCCAGAACAGCCTACATCGCACCCGGCTCGCCATGGGAGAACGGTTACGTCGAGAGCTTCAACGCACGAC
TACGGGACGAGCTTTTGAACGGTGAGATCTTCTACACGCTCAAGGAGGCGCAGATCGTGATCGAGAGTTGGCGTCTACAC
TACAACAGCGTGCGCCCGCACGCCTCGCTCGGCTACCGACCACCGGCCCCGGAGGTGTTCGTGCCGGCCTTCACCGCTTG
GCCGGCTGCGCTCACCCGGTCGGCTCCGCCGGCCAAGCGACCCGTGGAGCAAAGGCCGACCCTGCACTAA

Upstream 100 bases:

>100_bases
AGGCGATTGCGGATCTCACCCTCGACAAGCTGATCCTGCAGGAGGCCGCTCGGGGAAACTGACCAGCCCCGCGCGCCGAC
GCGCCTGCATCGCGCATGTC

Downstream 100 bases:

>100_bases
CTTAGAACTTGGACCACCGCGTGGGGGCCGATCAGTGGGGCGTCCGCGGCTCCACTGGAACCATCGTGTGCCCCATACAG
ATCTCGTTATGTCCGTTGTG

Product: integrase catalytic region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MNVLDVSERRACRALGQHRSTQRKVPRGREDEAALTADLVELARQYGRYGYRKIGALLKAAGWFVNDKRVERIWRREGLK
VPSRQPKRGRIWDGDGSCLRLRAERRDHVWSYDFVEARTHEGRKFRMLNVVDEFTRECLAIRVARKLKAADVIDVLSDLF
ILRGVPGHIRSDNGPEFIAKSVQAWITGVGARTAYIAPGSPWENGYVESFNARLRDELLNGEIFYTLKEAQIVIESWRLH
YNSVRPHASLGYRPPAPEVFVPAFTAWPAALTRSAPPAKRPVEQRPTLH

Sequences:

>Translated_289_residues
MNVLDVSERRACRALGQHRSTQRKVPRGREDEAALTADLVELARQYGRYGYRKIGALLKAAGWFVNDKRVERIWRREGLK
VPSRQPKRGRIWDGDGSCLRLRAERRDHVWSYDFVEARTHEGRKFRMLNVVDEFTRECLAIRVARKLKAADVIDVLSDLF
ILRGVPGHIRSDNGPEFIAKSVQAWITGVGARTAYIAPGSPWENGYVESFNARLRDELLNGEIFYTLKEAQIVIESWRLH
YNSVRPHASLGYRPPAPEVFVPAFTAWPAALTRSAPPAKRPVEQRPTLH
>Mature_289_residues
MNVLDVSERRACRALGQHRSTQRKVPRGREDEAALTADLVELARQYGRYGYRKIGALLKAAGWFVNDKRVERIWRREGLK
VPSRQPKRGRIWDGDGSCLRLRAERRDHVWSYDFVEARTHEGRKFRMLNVVDEFTRECLAIRVARKLKAADVIDVLSDLF
ILRGVPGHIRSDNGPEFIAKSVQAWITGVGARTAYIAPGSPWENGYVESFNARLRDELLNGEIFYTLKEAQIVIESWRLH
YNSVRPHASLGYRPPAPEVFVPAFTAWPAALTRSAPPAKRPVEQRPTLH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=228, Percent_Identity=25.4385964912281, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 33078; Mature: 33078

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLDVSERRACRALGQHRSTQRKVPRGREDEAALTADLVELARQYGRYGYRKIGALLKA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGWFVNDKRVERIWRREGLKVPSRQPKRGRIWDGDGSCLRLRAERRDHVWSYDFVEARTH
HCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCEEEEEEHHHCCCCCCHHHHHHCC
EGRKFRMLNVVDEFTRECLAIRVARKLKAADVIDVLSDLFILRGVPGHIRSDNGPEFIAK
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
SVQAWITGVGARTAYIAPGSPWENGYVESFNARLRDELLNGEIFYTLKEAQIVIESWRLH
HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHH
YNSVRPHASLGYRPPAPEVFVPAFTAWPAALTRSAPPAKRPVEQRPTLH
HCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNVLDVSERRACRALGQHRSTQRKVPRGREDEAALTADLVELARQYGRYGYRKIGALLKA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGWFVNDKRVERIWRREGLKVPSRQPKRGRIWDGDGSCLRLRAERRDHVWSYDFVEARTH
HCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCEEEEEEHHHCCCCCCHHHHHHCC
EGRKFRMLNVVDEFTRECLAIRVARKLKAADVIDVLSDLFILRGVPGHIRSDNGPEFIAK
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
SVQAWITGVGARTAYIAPGSPWENGYVESFNARLRDELLNGEIFYTLKEAQIVIESWRLH
HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHH
YNSVRPHASLGYRPPAPEVFVPAFTAWPAALTRSAPPAKRPVEQRPTLH
HCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152895 [H]