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The map label for this gene is psd [H]

Identifier: 218533081

GI number: 218533081

Start: 5571782

End: 5572492

Strand: Reverse

Name: psd [H]

Synonym: Mchl_5207

Alternate gene names: 218533081

Gene position: 5572492-5571782 (Counterclockwise)

Preceding gene: 218533082

Following gene: 218533080

Centisome position: 96.44

GC content: 66.95

Gene sequence:

>711_bases
ATGACCGACCTCATCGAGACGATCCGCCGGACGCTCGTGCCGATCCACAAGGAGGGCTACCCCTTCATCCTGATCGGCAT
CGTGCTCACCGTGGTGCTCGGCTACTTCTCGCAGTTCTTCGGCTGGATCTTCCTGATCCTCACGCTCTGGGTCTGCTACT
TCTTCCGCGATCCCGAGCGGGTGGTGCCGGTCGGCGACGGCCTCATCGTCTCCCCCGCAGACGGGCGCGTAAACCTGATC
TCGACCGTGCTGCCGCCGGCCGAACTCGACCTCTCGCACGAGCCGATGCTGCGGATCTCGGTGTTCATGAACGTGTTCGA
CTGCCACGTGAATCGCGTGCCGGTCTCCGGCAAGATCGGGCAGATCCACTACACGCCGGGCCTGTTCCTCAACGCCGAGC
TCGACAAGGCGAGCGAGGACAACGAGCGCAACGGCCTCGTCATGGAGACGACGCATCGCGGCCAGCCGGTGCGCATCGGC
GTGGTGCAGATCGCCGGCCTCGTAGCCCGGCGCATCGTCGGCTTCGTCTCGGCCGGTGAATCCAAGCAGGTCGGCGAGCG
CTTCGGCCTCATCCGATTCGGCTCGCGGGTCGATGTCTACCTGCCGCTCGGCACCCGCGTGCTTGTCGGCCTCGGCCAGA
AGGCGGTGGCCGGCGAGACCGTGCTGGCCGACCTCGGTGGCGGCTCGGAGCGGGCCTTCCGCCGCATCTGA

Upstream 100 bases:

>100_bases
CTCGGAGCCGGAAGCCGTGCACTAACCCGCGGTTGACGGAACCGCGCCCCCCTGCCATCCGGCGGGGAAGATTCGCCCCG
CCGGAGTCCAACGGGAGCCC

Downstream 100 bases:

>100_bases
TCTCTGTGCAGAAGAGCGACATGCCGAGAAGCGACGAGCCGAAAGACACGTCGAGAGACGAGTCGAGCGACGACATGGAC
GATCTGTTCCCGCCCTTCGC

Product: phosphatidylserine decarboxylase related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTDLIETIRRTLVPIHKEGYPFILIGIVLTVVLGYFSQFFGWIFLILTLWVCYFFRDPERVVPVGDGLIVSPADGRVNLI
STVLPPAELDLSHEPMLRISVFMNVFDCHVNRVPVSGKIGQIHYTPGLFLNAELDKASEDNERNGLVMETTHRGQPVRIG
VVQIAGLVARRIVGFVSAGESKQVGERFGLIRFGSRVDVYLPLGTRVLVGLGQKAVAGETVLADLGGGSERAFRRI

Sequences:

>Translated_236_residues
MTDLIETIRRTLVPIHKEGYPFILIGIVLTVVLGYFSQFFGWIFLILTLWVCYFFRDPERVVPVGDGLIVSPADGRVNLI
STVLPPAELDLSHEPMLRISVFMNVFDCHVNRVPVSGKIGQIHYTPGLFLNAELDKASEDNERNGLVMETTHRGQPVRIG
VVQIAGLVARRIVGFVSAGESKQVGERFGLIRFGSRVDVYLPLGTRVLVGLGQKAVAGETVLADLGGGSERAFRRI
>Mature_235_residues
TDLIETIRRTLVPIHKEGYPFILIGIVLTVVLGYFSQFFGWIFLILTLWVCYFFRDPERVVPVGDGLIVSPADGRVNLIS
TVLPPAELDLSHEPMLRISVFMNVFDCHVNRVPVSGKIGQIHYTPGLFLNAELDKASEDNERNGLVMETTHRGQPVRIGV
VQIAGLVARRIVGFVSAGESKQVGERFGLIRFGSRVDVYLPLGTRVLVGLGQKAVAGETVLADLGGGSERAFRRI

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 26029; Mature: 25898

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLIETIRRTLVPIHKEGYPFILIGIVLTVVLGYFSQFFGWIFLILTLWVCYFFRDPER
CHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VVPVGDGLIVSPADGRVNLISTVLPPAELDLSHEPMLRISVFMNVFDCHVNRVPVSGKIG
EEECCCCEEEECCCCCEEEHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
QIHYTPGLFLNAELDKASEDNERNGLVMETTHRGQPVRIGVVQIAGLVARRIVGFVSAGE
EEEECCCEEEECCCCCCCCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCC
SKQVGERFGLIRFGSRVDVYLPLGTRVLVGLGQKAVAGETVLADLGGGSERAFRRI
CHHHHHHHCEEEECCEEEEEECCCCEEEHCCCCCHHCCCEEEEECCCCCHHHHHCC
>Mature Secondary Structure 
TDLIETIRRTLVPIHKEGYPFILIGIVLTVVLGYFSQFFGWIFLILTLWVCYFFRDPER
HHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VVPVGDGLIVSPADGRVNLISTVLPPAELDLSHEPMLRISVFMNVFDCHVNRVPVSGKIG
EEECCCCEEEECCCCCEEEHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
QIHYTPGLFLNAELDKASEDNERNGLVMETTHRGQPVRIGVVQIAGLVARRIVGFVSAGE
EEEECCCEEEECCCCCCCCCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCC
SKQVGERFGLIRFGSRVDVYLPLGTRVLVGLGQKAVAGETVLADLGGGSERAFRRI
CHHHHHHHCEEEECCEEEEEECCCCEEEHCCCCCHHCCCEEEEECCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA