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The map label for this gene is sodC [H]

Identifier: 218532565

GI number: 218532565

Start: 4959308

End: 4959913

Strand: Reverse

Name: sodC [H]

Synonym: Mchl_4679

Alternate gene names: 218532565

Gene position: 4959913-4959308 (Counterclockwise)

Preceding gene: 218532568

Following gene: 218532558

Centisome position: 85.84

GC content: 69.31

Gene sequence:

>606_bases
ATGCGAGGGGCCACGACGCCTGCCATCCGCCGTATACCGGTCGCCATCCCTTTGGCCGCGGCCCTGCTCGCGGGCCTTGC
CGGGTCCGCCTTCGCGCAAGATGCCAAGGAGGCTCCGAAGGAGCCGGCCCCCGCCAAGACGGAGAGTGCCGGCGCGCCGC
AGACCTACGAGAGCGCGATCACCAACGGCAAGGGTGACAGCATCGGCAAGATCATGATCCGCGACGGGGCGAATTCCCTC
GTCATGCGGCTGTCGATTCAGGCCGGCGGCCTGCCTCCGGGCTGGCACGGCATCCATTTCCACGCCGTCGGCGACTGCTC
GGACACGGAGAAGTTCGAGAAGTCGAAGGCCCACGTGAACCACGACCAGAGCAAGCACGGCCTGCTCAACCCCGATGGCC
CGGACGAGGGCGACCTGCCCAACGTCTACGCCAACGCCGACGGCTCGGTGAACGCGGAAGTGTCGAGCGAGACCCCGCTG
ACCGGCGAGGGCGGCCTGCGCGACGGCGACGGCTCGGCGCTGATCATCCACGCCAACGAGGACGACCACACCAGCCAGCC
CATCGGCGGCGCGGGCGCGCGCATCGGCTGCGCGGTGATCAAGTAA

Upstream 100 bases:

>100_bases
GGGTAGCCCGGATTGCGCACCGCCTCAAGCGGTGGCGGAATCCCGGGCGGAACCGCCGGGCCGCAGCAACGGAGTGAGTC
AGTTCATGAGAGGTGCCATC

Downstream 100 bases:

>100_bases
CACGCCTTTTGCCCTCCCCCCTGCGGGGGAGGGCGTTGGCGGAGGCTACCGCTTCAGGCTCACCACGCTGCCTTCGCGCT
GCGCCGCCTTCTCCGGCAGC

Product: superoxide dismutase copper/zinc binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MRGATTPAIRRIPVAIPLAAALLAGLAGSAFAQDAKEAPKEPAPAKTESAGAPQTYESAITNGKGDSIGKIMIRDGANSL
VMRLSIQAGGLPPGWHGIHFHAVGDCSDTEKFEKSKAHVNHDQSKHGLLNPDGPDEGDLPNVYANADGSVNAEVSSETPL
TGEGGLRDGDGSALIIHANEDDHTSQPIGGAGARIGCAVIK

Sequences:

>Translated_201_residues
MRGATTPAIRRIPVAIPLAAALLAGLAGSAFAQDAKEAPKEPAPAKTESAGAPQTYESAITNGKGDSIGKIMIRDGANSL
VMRLSIQAGGLPPGWHGIHFHAVGDCSDTEKFEKSKAHVNHDQSKHGLLNPDGPDEGDLPNVYANADGSVNAEVSSETPL
TGEGGLRDGDGSALIIHANEDDHTSQPIGGAGARIGCAVIK
>Mature_201_residues
MRGATTPAIRRIPVAIPLAAALLAGLAGSAFAQDAKEAPKEPAPAKTESAGAPQTYESAITNGKGDSIGKIMIRDGANSL
VMRLSIQAGGLPPGWHGIHFHAVGDCSDTEKFEKSKAHVNHDQSKHGLLNPDGPDEGDLPNVYANADGSVNAEVSSETPL
TGEGGLRDGDGSALIIHANEDDHTSQPIGGAGARIGCAVIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May function against extracytoplasmic toxic oxygen species [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=153, Percent_Identity=33.9869281045752, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 20511; Mature: 20511

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS00087 SOD_CU_ZN_1 ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGATTPAIRRIPVAIPLAAALLAGLAGSAFAQDAKEAPKEPAPAKTESAGAPQTYESAI
CCCCCCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
TNGKGDSIGKIMIRDGANSLVMRLSIQAGGLPPGWHGIHFHAVGDCSDTEKFEKSKAHVN
CCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCC
HDQSKHGLLNPDGPDEGDLPNVYANADGSVNAEVSSETPLTGEGGLRDGDGSALIIHANE
CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCC
DDHTSQPIGGAGARIGCAVIK
CCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MRGATTPAIRRIPVAIPLAAALLAGLAGSAFAQDAKEAPKEPAPAKTESAGAPQTYESAI
CCCCCCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
TNGKGDSIGKIMIRDGANSLVMRLSIQAGGLPPGWHGIHFHAVGDCSDTEKFEKSKAHVN
CCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCC
HDQSKHGLLNPDGPDEGDLPNVYANADGSVNAEVSSETPLTGEGGLRDGDGSALIIHANE
CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCC
DDHTSQPIGGAGARIGCAVIK
CCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2345128; 11259647; 7050107 [H]