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The map label for this gene is yafC [H]

Identifier: 218532532

GI number: 218532532

Start: 4926143

End: 4927081

Strand: Reverse

Name: yafC [H]

Synonym: Mchl_4646

Alternate gene names: 218532532

Gene position: 4927081-4926143 (Counterclockwise)

Preceding gene: 218532534

Following gene: 218532531

Centisome position: 85.27

GC content: 73.91

Gene sequence:

>939_bases
ATGGCCTGGGACGAATTCCGCCTCGTGCAGGCTATCGCCGACCGGGGCGCGCTGGCTCCGGCTGCAGCGCATCTCGGCAT
CAACCCCTCCACCGCCTTCCGCCGCCTCGCGGCGGTCGAGGCGGAACTCGGTGCGCGCCTGTTCGAGCGCCATCGGTCCG
GCTACGTGCCGACGCCGGCGGGCGAGGCGATGGCTGCTGCGGCCGCGCGGATGGAGGAGGAGGTCGCCCGCTTCGACCGG
GAGGTCGCCGACCGGGCGCAGACGCCCTCGGGGCTTCTGCGCGTCACCGCCGCGGCGACGCTTGTCACCGATTTCCTGAT
GCCGATACTCGGCCGATTCCGGGCGCGCTACCGACAAGTCCAGATCGAACTCGTTACCTCCGAGGAGGCGCTGAACCTGT
CCCGCCGCGATGCGGACGTGGCGTTGCGGGCCACCCACGACCCACCGCCGAACCTCGTCGGGCGCCGGCTCGGCACCATC
GCCTGGGCGGTCTACGGTCCGGCGCGCGAAGACGCGGACGGCGAGACGGACGGCGGCGACGCCGACTGGGTCAGCCCGAG
CGAGGCGGTGGCCGGCGGCCTCTTCGCGCGCTTCGTCGCCGCCCGCGCCGGGCCGGAGCGGATCGCGCTGCGCCTCAACA
GCGTGCAGGGGCTGTGCGAGGCGATCGTGGAGGGCGTCGGCATCGGGCCGCTGCCCTGCTACCGCGGCGACCGGCTCGCA
TCGCTGAGACGCCTTTCAGGGCCGGAGCCGGAGTTGGCCGGTTCGCTCTGGCTCCTGACCCACCCGGACCTGCGCCACGC
GGCGCGGGTGCGGGCCTTCATGGACCATGTCGCCGCCGAGGTCGCGCCGTTGCGCCCGGTCCTGGAAGGGCGCCAAGGGG
ACGATCCAAGCAGCAGGGGGGCCGCCCGGCTCGAGGCTTTGCCCGGAACGCCGTCCTGA

Upstream 100 bases:

>100_bases
GCGACTCCTATGAAGGTTCGCGCTGTTTGCAGAAATGCCCTGACGTGCAAGATCATTCTTGCAGATCTGCAAGCGAGAGA
CGGGGGAGGGCGCGGTGCCG

Downstream 100 bases:

>100_bases
AACGCTCGCCCGGCGCGGTGCCGTTCGCATCGCGGAGCCCTGACCCGCCGTCGCGCGAGGGCGCTCAACGCAATTGCGCA
ACGGCCGGTCCCGCCTGTAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MAWDEFRLVQAIADRGALAPAAAHLGINPSTAFRRLAAVEAELGARLFERHRSGYVPTPAGEAMAAAAARMEEEVARFDR
EVADRAQTPSGLLRVTAAATLVTDFLMPILGRFRARYRQVQIELVTSEEALNLSRRDADVALRATHDPPPNLVGRRLGTI
AWAVYGPAREDADGETDGGDADWVSPSEAVAGGLFARFVAARAGPERIALRLNSVQGLCEAIVEGVGIGPLPCYRGDRLA
SLRRLSGPEPELAGSLWLLTHPDLRHAARVRAFMDHVAAEVAPLRPVLEGRQGDDPSSRGAARLEALPGTPS

Sequences:

>Translated_312_residues
MAWDEFRLVQAIADRGALAPAAAHLGINPSTAFRRLAAVEAELGARLFERHRSGYVPTPAGEAMAAAAARMEEEVARFDR
EVADRAQTPSGLLRVTAAATLVTDFLMPILGRFRARYRQVQIELVTSEEALNLSRRDADVALRATHDPPPNLVGRRLGTI
AWAVYGPAREDADGETDGGDADWVSPSEAVAGGLFARFVAARAGPERIALRLNSVQGLCEAIVEGVGIGPLPCYRGDRLA
SLRRLSGPEPELAGSLWLLTHPDLRHAARVRAFMDHVAAEVAPLRPVLEGRQGDDPSSRGAARLEALPGTPS
>Mature_311_residues
AWDEFRLVQAIADRGALAPAAAHLGINPSTAFRRLAAVEAELGARLFERHRSGYVPTPAGEAMAAAAARMEEEVARFDRE
VADRAQTPSGLLRVTAAATLVTDFLMPILGRFRARYRQVQIELVTSEEALNLSRRDADVALRATHDPPPNLVGRRLGTIA
WAVYGPAREDADGETDGGDADWVSPSEAVAGGLFARFVAARAGPERIALRLNSVQGLCEAIVEGVGIGPLPCYRGDRLAS
LRRLSGPEPELAGSLWLLTHPDLRHAARVRAFMDHVAAEVAPLRPVLEGRQGDDPSSRGAARLEALPGTPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=141, Percent_Identity=34.7517730496454, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081978, Length=156, Percent_Identity=26.2820512820513, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33423; Mature: 33292

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWDEFRLVQAIADRGALAPAAAHLGINPSTAFRRLAAVEAELGARLFERHRSGYVPTPA
CCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GEAMAAAAARMEEEVARFDREVADRAQTPSGLLRVTAAATLVTDFLMPILGRFRARYRQV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
QIELVTSEEALNLSRRDADVALRATHDPPPNLVGRRLGTIAWAVYGPAREDADGETDGGD
EEEEEECHHHHCCHHCCCCEEEEECCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
ADWVSPSEAVAGGLFARFVAARAGPERIALRLNSVQGLCEAIVEGVGIGPLPCYRGDRLA
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
SLRRLSGPEPELAGSLWLLTHPDLRHAARVRAFMDHVAAEVAPLRPVLEGRQGDDPSSRG
HHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
AARLEALPGTPS
CHHHCCCCCCCC
>Mature Secondary Structure 
AWDEFRLVQAIADRGALAPAAAHLGINPSTAFRRLAAVEAELGARLFERHRSGYVPTPA
CCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GEAMAAAAARMEEEVARFDREVADRAQTPSGLLRVTAAATLVTDFLMPILGRFRARYRQV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
QIELVTSEEALNLSRRDADVALRATHDPPPNLVGRRLGTIAWAVYGPAREDADGETDGGD
EEEEEECHHHHCCHHCCCCEEEEECCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
ADWVSPSEAVAGGLFARFVAARAGPERIALRLNSVQGLCEAIVEGVGIGPLPCYRGDRLA
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
SLRRLSGPEPELAGSLWLLTHPDLRHAARVRAFMDHVAAEVAPLRPVLEGRQGDDPSSRG
HHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
AARLEALPGTPS
CHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]