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The map label for this gene is yoaB [C]

Identifier: 218532277

GI number: 218532277

Start: 4640595

End: 4640954

Strand: Reverse

Name: yoaB [C]

Synonym: Mchl_4389

Alternate gene names: 218532277

Gene position: 4640954-4640595 (Counterclockwise)

Preceding gene: 218532279

Following gene: 218532276

Centisome position: 80.32

GC content: 68.61

Gene sequence:

>360_bases
ATGACCATCGAACGCTACGAGACCGGCCCGCGCATGTCCCAGGCGGTCGCCCATGGCGACCTCGTGTTCCTGGCGGGTCA
GGTGGCCGCCGACGTGGTCGGCACCGGCGTCACCGCACAGACGCAACAGATCCTGGAACAGATCGACCGGCTGCTGATGG
CGACGGGCAGCGACAAGGCCCGCATCCTCTCGGCGACCGTCTATCTCGCCGATATCGGGAGCTTTGCCGAGATGAACGCC
GCCTGGGACGCCTGGGTCGACAAGGGGAACCCGCCCGCCCGCGCCACCGTCGAGGCGCGGCTCGCCGGGCCGGAATACCT
CGTCGAGATCGTCGTCACGGCCGTCCGGGGTAAATCGTGA

Upstream 100 bases:

>100_bases
CTCCGGCATTCCGGCGCGCCGCTCGAACCCCTTTACGGGGTACTGCTCCGGGCGGCAGAAGGAGGCGCTTCCTTCACGAA
TCGAGACCGGCGACCCTACG

Downstream 100 bases:

>100_bases
TCCGGCGGCTCCTGCTGGGAGGGCTCGCCGCCCTCCCCTTCCTCCTCTGCGCGACCGGCGGGGTGCGGGCCGAGGAGCGG
GTCGTCAACATCTACAACTG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MTIERYETGPRMSQAVAHGDLVFLAGQVAADVVGTGVTAQTQQILEQIDRLLMATGSDKARILSATVYLADIGSFAEMNA
AWDAWVDKGNPPARATVEARLAGPEYLVEIVVTAVRGKS

Sequences:

>Translated_119_residues
MTIERYETGPRMSQAVAHGDLVFLAGQVAADVVGTGVTAQTQQILEQIDRLLMATGSDKARILSATVYLADIGSFAEMNA
AWDAWVDKGNPPARATVEARLAGPEYLVEIVVTAVRGKS
>Mature_118_residues
TIERYETGPRMSQAVAHGDLVFLAGQVAADVVGTGVTAQTQQILEQIDRLLMATGSDKARILSATVYLADIGSFAEMNAA
WDAWVDKGNPPARATVEARLAGPEYLVEIVVTAVRGKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=42.9824561403509, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12662; Mature: 12530

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIERYETGPRMSQAVAHGDLVFLAGQVAADVVGTGVTAQTQQILEQIDRLLMATGSDKA
CCCCCCCCCCHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCH
RILSATVYLADIGSFAEMNAAWDAWVDKGNPPARATVEARLAGPEYLVEIVVTAVRGKS
HHHHHHHHHHHHCCHHHHCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TIERYETGPRMSQAVAHGDLVFLAGQVAADVVGTGVTAQTQQILEQIDRLLMATGSDKA
CCCCCCCCCHHHHHHHCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCH
RILSATVYLADIGSFAEMNAAWDAWVDKGNPPARATVEARLAGPEYLVEIVVTAVRGKS
HHHHHHHHHHHHCCHHHHCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]