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The map label for this gene is intF [C]

Identifier: 218532007

GI number: 218532007

Start: 4317113

End: 4318507

Strand: Reverse

Name: intF [C]

Synonym: Mchl_4097

Alternate gene names: 218532007

Gene position: 4318507-4317113 (Counterclockwise)

Preceding gene: 218532013

Following gene: 218532005

Centisome position: 74.74

GC content: 63.87

Gene sequence:

>1395_bases
ATGCCGCGCCCGTCATCATCCGACACCCGTTACCTTGAGCAGAACCACGGGAAATGGCGTGTCACGATTGCCGTCCCGCG
CGACCTCCAGAGCAAGCTCGGCACGCGCCTGAAACGTCCCCTTCAGACCGACAGTCTCGCCATCGCGAACCAGCTCAAGT
GGCAGGTGATCGGGGAGCTGAAGGCCGAAATCGAAGCGGCTCGGCGGGGGCCGGGAGGTGCCACGAAAGCCGATGTCCTT
ACCCGCGAGGCGTTGGCGATGGCCGCCCAACGGGCGCGCGCGCAGACGCATGAAGAGATCGACACGCTGGACTACGCCGT
GCGTGAGCGGAGTGAGGCTATCCTCGGCAGGCCCATCGCTGTGGAGCAGCTTCCCGGCCACGATGCGGAGCCCGTCTACG
ATCCTGAGAAGGAAGCGGCTGCGGCGCAATTTCAGGCGCTGGCGATGGGTGAGGCCACGCCTATCGCCCATCATCATCGT
CAGTTCGTGGAGCAGGCAGGCAACAAGAGCCGAACGCGCGGGGACGATGAGCGCGCCATTCGCTTCTTGGCTTCATGGTG
TGAAAGCAAACGGGTCACCCCGACCTTGGAGGCCATCACGCGCCGCGAGGCGGTGCGGTTCATGGACGATCTGCCAACCC
TCACACCAGAGCCACTGAGCCCCGTCACCCTGAAGAAGTACCTGAACCGCCTCTCCCGCTACTGGCAGTGGCTGGAGCTT
CGCGGGCACGTTCAGAACGACGTGTGGGCGCGTCTCCAGCTCCCAAAGCCGAAGATCAAGCCACAGGAGGAGCGGGCCTT
CACGGATGACGAAGTGGGCCGCCTCCTGAAGGGTGATGCTCCGCAGAAGCTCCACGACCTGATGCGCATCGGTGCGCTTA
CGGGCGCTCGGCTGGACGCCATCGTTGACCTGAAGGTGAAGGACTGCGCGGCTGGCCTGTTCACATTCAAGCCGCAGAAG
AAGGAGGCGAAAGAGCGGGCGGTGCCTATCCACCCTGCCCTATACGAGATTGTCGCTCGCCGTATCGAGGGGAAGGCACC
GGAGGATGACGTGTTCCCTGAATGGCCTGCTCCGAAGAAGGAGGGCTCTCAGCGGGAGCGGTCCTTCAAGGCCTCGAACC
AGTTCACGGACTACCGTCGAACCGTAGGGGTCGATCATGTCGTGCCCGGTCAACGCCGCTCCCTCGTCAACTTCCACAGC
TTCCGGCGCTGGTTCATCACGAAGGCCGAGCAAGCCGACCAGCCCGAGAGCATCATCGCTGCTGTGGTTGGACACAAGCG
TAAGGGGATGACCCTCGGGCGGTACTCCGCGGGGCCGCTGATTGCGCAAGCGAGGCGGTGCGTTGAGGCTGTGACGCTAC
CTACGGAGAAAGTGGACAGCTCGAAGCCCAGCTAG

Upstream 100 bases:

>100_bases
GAGGTTGGATAAGCCGTTGCAGACTAAGAAACTATCGACATTACAAAGGCTTCCGAGTACCCATGCGAGGTACTTTTTGG
GGTACGCAGAGGCCCTTGGG

Downstream 100 bases:

>100_bases
GAACAATGCCGCGCCTTCGGTCGCCATACCCTACCGCTTCTTGCCCAGCTCTGCCGCGATGTCCTTGGTCATGCGGCCGA
CTTTTCGGTGCGCGGCGGTG

Product: integrase family protein

Products: NA

Alternate protein names: Phage Integrase; Integrase; Phage Integrase Family Protein

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MPRPSSSDTRYLEQNHGKWRVTIAVPRDLQSKLGTRLKRPLQTDSLAIANQLKWQVIGELKAEIEAARRGPGGATKADVL
TREALAMAAQRARAQTHEEIDTLDYAVRERSEAILGRPIAVEQLPGHDAEPVYDPEKEAAAAQFQALAMGEATPIAHHHR
QFVEQAGNKSRTRGDDERAIRFLASWCESKRVTPTLEAITRREAVRFMDDLPTLTPEPLSPVTLKKYLNRLSRYWQWLEL
RGHVQNDVWARLQLPKPKIKPQEERAFTDDEVGRLLKGDAPQKLHDLMRIGALTGARLDAIVDLKVKDCAAGLFTFKPQK
KEAKERAVPIHPALYEIVARRIEGKAPEDDVFPEWPAPKKEGSQRERSFKASNQFTDYRRTVGVDHVVPGQRRSLVNFHS
FRRWFITKAEQADQPESIIAAVVGHKRKGMTLGRYSAGPLIAQARRCVEAVTLPTEKVDSSKPS

Sequences:

>Translated_464_residues
MPRPSSSDTRYLEQNHGKWRVTIAVPRDLQSKLGTRLKRPLQTDSLAIANQLKWQVIGELKAEIEAARRGPGGATKADVL
TREALAMAAQRARAQTHEEIDTLDYAVRERSEAILGRPIAVEQLPGHDAEPVYDPEKEAAAAQFQALAMGEATPIAHHHR
QFVEQAGNKSRTRGDDERAIRFLASWCESKRVTPTLEAITRREAVRFMDDLPTLTPEPLSPVTLKKYLNRLSRYWQWLEL
RGHVQNDVWARLQLPKPKIKPQEERAFTDDEVGRLLKGDAPQKLHDLMRIGALTGARLDAIVDLKVKDCAAGLFTFKPQK
KEAKERAVPIHPALYEIVARRIEGKAPEDDVFPEWPAPKKEGSQRERSFKASNQFTDYRRTVGVDHVVPGQRRSLVNFHS
FRRWFITKAEQADQPESIIAAVVGHKRKGMTLGRYSAGPLIAQARRCVEAVTLPTEKVDSSKPS
>Mature_463_residues
PRPSSSDTRYLEQNHGKWRVTIAVPRDLQSKLGTRLKRPLQTDSLAIANQLKWQVIGELKAEIEAARRGPGGATKADVLT
REALAMAAQRARAQTHEEIDTLDYAVRERSEAILGRPIAVEQLPGHDAEPVYDPEKEAAAAQFQALAMGEATPIAHHHRQ
FVEQAGNKSRTRGDDERAIRFLASWCESKRVTPTLEAITRREAVRFMDDLPTLTPEPLSPVTLKKYLNRLSRYWQWLELR
GHVQNDVWARLQLPKPKIKPQEERAFTDDEVGRLLKGDAPQKLHDLMRIGALTGARLDAIVDLKVKDCAAGLFTFKPQKK
EAKERAVPIHPALYEIVARRIEGKAPEDDVFPEWPAPKKEGSQRERSFKASNQFTDYRRTVGVDHVVPGQRRSLVNFHSF
RRWFITKAEQADQPESIIAAVVGHKRKGMTLGRYSAGPLIAQARRCVEAVTLPTEKVDSSKPS

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52324; Mature: 52193

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPSSSDTRYLEQNHGKWRVTIAVPRDLQSKLGTRLKRPLQTDSLAIANQLKWQVIGEL
CCCCCCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KAEIEAARRGPGGATKADVLTREALAMAAQRARAQTHEEIDTLDYAVRERSEAILGRPIA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VEQLPGHDAEPVYDPEKEAAAAQFQALAMGEATPIAHHHRQFVEQAGNKSRTRGDDERAI
ECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
RFLASWCESKRVTPTLEAITRREAVRFMDDLPTLTPEPLSPVTLKKYLNRLSRYWQWLEL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RGHVQNDVWARLQLPKPKIKPQEERAFTDDEVGRLLKGDAPQKLHDLMRIGALTGARLDA
HCCCCCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
IVDLKVKDCAAGLFTFKPQKKEAKERAVPIHPALYEIVARRIEGKAPEDDVFPEWPAPKK
EEEEEHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
EGSQRERSFKASNQFTDYRRTVGVDHVVPGQRRSLVNFHSFRRWFITKAEQADQPESIIA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCHHCCCCHHHHHH
AVVGHKRKGMTLGRYSAGPLIAQARRCVEAVTLPTEKVDSSKPS
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCC
>Mature Secondary Structure 
PRPSSSDTRYLEQNHGKWRVTIAVPRDLQSKLGTRLKRPLQTDSLAIANQLKWQVIGEL
CCCCCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
KAEIEAARRGPGGATKADVLTREALAMAAQRARAQTHEEIDTLDYAVRERSEAILGRPIA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VEQLPGHDAEPVYDPEKEAAAAQFQALAMGEATPIAHHHRQFVEQAGNKSRTRGDDERAI
ECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
RFLASWCESKRVTPTLEAITRREAVRFMDDLPTLTPEPLSPVTLKKYLNRLSRYWQWLEL
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RGHVQNDVWARLQLPKPKIKPQEERAFTDDEVGRLLKGDAPQKLHDLMRIGALTGARLDA
HCCCCCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHH
IVDLKVKDCAAGLFTFKPQKKEAKERAVPIHPALYEIVARRIEGKAPEDDVFPEWPAPKK
EEEEEHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
EGSQRERSFKASNQFTDYRRTVGVDHVVPGQRRSLVNFHSFRRWFITKAEQADQPESIIA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCHHCCCCHHHHHH
AVVGHKRKGMTLGRYSAGPLIAQARRCVEAVTLPTEKVDSSKPS
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA