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The map label for this gene is fecI [H]

Identifier: 218531966

GI number: 218531966

Start: 4273614

End: 4274156

Strand: Reverse

Name: fecI [H]

Synonym: Mchl_4054

Alternate gene names: 218531966

Gene position: 4274156-4273614 (Counterclockwise)

Preceding gene: 218531974

Following gene: 218531965

Centisome position: 73.97

GC content: 69.8

Gene sequence:

>543_bases
GTGGGCGACGGGACCGACCTCATGGCGGGAGGGGCGGCGGGGGTGTCGATCGATGCCCTCTACCGTCACGAGGGGCTGAA
GCTCCGGCGTTTCCTCCAGCGCCTGCTCGACAACCCGGCCGACGCCGCGGATGCGAGCCAGGAAACCTACCTGCGCATGG
TCGCCGCGCTCTCGCGCACGAGCATCGAGCACCCCTCGGCCCTGCTGTTCCGCATCGCCACCAACGTCGCCCTGCGGATG
CGCAACCGCGGCCGGCTGGAGCGGATTCTGTTCGCGGCGAAATGCGAGGCGGAACTCGCTGAGATCGCCGACGGCTACGC
CCTCCCCGAGCGGCAGACGATCGCCCGCCAGGAGCTGAAGCGCCTCGCCGCGGCGATCGACGCCTTGCCGCCCCGCTGCC
GCGAGGTGTTCCTGCTCAGCCGCCTCGACGGCCTCGCGAACGGCGAGATCGCGCAGCGCCTCGGCATCTCGCGCAACATG
GTCGAGAAGCACATCATCAAGGCCCTGCTGCATTGCCGGCGCAGCCGCCTCGATCTTTTTTGA

Upstream 100 bases:

>100_bases
GTCCGCTAGACTGGAAATGATACAAGCTATTGTGGGGCTTGCATAATCCACGCGTCTCCTTCTGGTCGGTCCTCAGTCAT
CGATCAGCGTGGGATCATCT

Downstream 100 bases:

>100_bases
ACGAGTCGCATCAGGAGGCGGCGACCTCGTTGATCTAAGGGGATAGGACACCCGCGCTGCGCCATTTCGGGCCGCGGTGG
GCCCCAGGGGGATTGGCGTG

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MGDGTDLMAGGAAGVSIDALYRHEGLKLRRFLQRLLDNPADAADASQETYLRMVAALSRTSIEHPSALLFRIATNVALRM
RNRGRLERILFAAKCEAELAEIADGYALPERQTIARQELKRLAAAIDALPPRCREVFLLSRLDGLANGEIAQRLGISRNM
VEKHIIKALLHCRRSRLDLF

Sequences:

>Translated_180_residues
MGDGTDLMAGGAAGVSIDALYRHEGLKLRRFLQRLLDNPADAADASQETYLRMVAALSRTSIEHPSALLFRIATNVALRM
RNRGRLERILFAAKCEAELAEIADGYALPERQTIARQELKRLAAAIDALPPRCREVFLLSRLDGLANGEIAQRLGISRNM
VEKHIIKALLHCRRSRLDLF
>Mature_179_residues
GDGTDLMAGGAAGVSIDALYRHEGLKLRRFLQRLLDNPADAADASQETYLRMVAALSRTSIEHPSALLFRIATNVALRMR
NRGRLERILFAAKCEAELAEIADGYALPERQTIARQELKRLAAAIDALPPRCREVFLLSRLDGLANGEIAQRLGISRNMV
EKHIIKALLHCRRSRLDLF

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=172, Percent_Identity=34.8837209302326, Blast_Score=90, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20046; Mature: 19914

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDGTDLMAGGAAGVSIDALYRHEGLKLRRFLQRLLDNPADAADASQETYLRMVAALSRT
CCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
SIEHPSALLFRIATNVALRMRNRGRLERILFAAKCEAELAEIADGYALPERQTIARQELK
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
RLAAAIDALPPRCREVFLLSRLDGLANGEIAQRLGISRNMVEKHIIKALLHCRRSRLDLF
HHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GDGTDLMAGGAAGVSIDALYRHEGLKLRRFLQRLLDNPADAADASQETYLRMVAALSRT
CCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
SIEHPSALLFRIATNVALRMRNRGRLERILFAAKCEAELAEIADGYALPERQTIARQELK
CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
RLAAAIDALPPRCREVFLLSRLDGLANGEIAQRLGISRNMVEKHIIKALLHCRRSRLDLF
HHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]