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The map label for this gene is nodC [H]

Identifier: 218531857

GI number: 218531857

Start: 4127814

End: 4129085

Strand: Reverse

Name: nodC [H]

Synonym: Mchl_3933

Alternate gene names: 218531857

Gene position: 4129085-4127814 (Counterclockwise)

Preceding gene: 218531858

Following gene: 218531856

Centisome position: 71.46

GC content: 56.92

Gene sequence:

>1272_bases
ATGTTCGCGATGCTGTATGTGATCGCTGATACGAATTGGCTTTTGCTTGCTTTTTCCGCTCTTATGTTCGATCTGCCCCG
CTACACGTTTTCGCTCCTTTCCTGGTCATTGGTCGGCATATTCAGGAGTTCTCGACCCGGCGATAGGCGGGTCGAGGCGG
CCGTGAGCGTGATCATCCCGACCTTCAATGGTGGTTCGGGGCTTGCTCCGACGATCGCCTCACTCCGCCAGCAAACCTTG
TCGCCACTTGAGATTATCATCGTTGACGATGGCTCCACGGACGATACGCGCGCCGTCGCAAACCGAGCGCGCCAAGACGG
CTTGGTGGATATGGTCATTTGCCACGGGACGCGCTGCGGCCGCAGTGCTGCGATCAACGCAGCAGCGAGGTTCGCGAGCG
GCGATCTCATCTTCACAATCGATGCTGATACAGTTCTTGAGCGCGACGCGATCGCACGGCTTGCCAATGCGTTCAATGAT
CCGCGCGTGGCCGGCGCCTGCGGCAACATCGCGATTCGCAACGAGAGCGCGTCGCTATGGACCGGGCTGCAGAGCGTCGA
ATATATGATGTCGATCAGCGCCGGAAAATCTATTCTCGATGTTGTCGGCGCGATTGCCTGCCTGTCCGGCGCATGTTCGA
TGTACCGGCGCGATGTCTTCGCGCGGCAAGGCGGCCTTGATGTCGGCCCTGGCGAGGATCTCGAGTTCAGCCTGAGGTTA
CGGCGCCTTGGTTATCGGGTCCGCTTTGTGCCAGATGCCTGGGCTGAAACGGACGGTCCGGTGGCAGCCGTCGGTCTTCT
GCGCCAGCGCGCGCGCTGGGATCGCGACGCGTTGCGCATCCGCTCCATGATGTATGGAGAGCTTAGCTTCTTCCATCCAC
TGGAGCGACTGCCGGACACCCTCCAGCGACTGGATTTCATCGTCTTCGATTTGATCCCGACGATGAGCCTCCCGTTTTAT
TCAATTTACATTGTGATTTTGTTTGGACCGGCTCACGCCATCCTCTTTATTGCTGCAATATATTTCCTTTTGCTTTGGAT
TTCGCTTTTTAATATGGCGCTGGCTTTCGTTCTATTCAGCAGATCGCCCAGTTTTTTCAGCCTTGGAGCTGCATTTATAT
TCCCATTCTACCAAGGAATTTACATGAAATGCGCCCGCTTCGTTTCCTATTCGTCGGAAATCCTCTTCGCCACCTCGCGG
CGTGATGACTACGTGCCGCCGCGCGTCCGCCGTGCGCTCTTCGCAGACGAGGTTGGAAAGGTGGTCTCATGA

Upstream 100 bases:

>100_bases
TATCTAGAGTTTTTACCCCATACTGCCGGATGGCACGATTCTCTGAATAGCTAATCCGAAGCGAATAGTGCGAACGACGA
CCAAACATTTGAGGTGATCG

Downstream 100 bases:

>100_bases
ACGTTCGTATCAACCGCCTGGACCCGAATGTGCCGGATCCCGTCGAGAGCCGCCGGCGCGCCGCCGGGCGGGTCGTGCGC
ATTGCCTACGCCGTGGGCAT

Product: glycosyl transferase family 2

Products: NA

Alternate protein names: Nodulation protein C [H]

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MFAMLYVIADTNWLLLAFSALMFDLPRYTFSLLSWSLVGIFRSSRPGDRRVEAAVSVIIPTFNGGSGLAPTIASLRQQTL
SPLEIIIVDDGSTDDTRAVANRARQDGLVDMVICHGTRCGRSAAINAAARFASGDLIFTIDADTVLERDAIARLANAFND
PRVAGACGNIAIRNESASLWTGLQSVEYMMSISAGKSILDVVGAIACLSGACSMYRRDVFARQGGLDVGPGEDLEFSLRL
RRLGYRVRFVPDAWAETDGPVAAVGLLRQRARWDRDALRIRSMMYGELSFFHPLERLPDTLQRLDFIVFDLIPTMSLPFY
SIYIVILFGPAHAILFIAAIYFLLLWISLFNMALAFVLFSRSPSFFSLGAAFIFPFYQGIYMKCARFVSYSSEILFATSR
RDDYVPPRVRRALFADEVGKVVS

Sequences:

>Translated_423_residues
MFAMLYVIADTNWLLLAFSALMFDLPRYTFSLLSWSLVGIFRSSRPGDRRVEAAVSVIIPTFNGGSGLAPTIASLRQQTL
SPLEIIIVDDGSTDDTRAVANRARQDGLVDMVICHGTRCGRSAAINAAARFASGDLIFTIDADTVLERDAIARLANAFND
PRVAGACGNIAIRNESASLWTGLQSVEYMMSISAGKSILDVVGAIACLSGACSMYRRDVFARQGGLDVGPGEDLEFSLRL
RRLGYRVRFVPDAWAETDGPVAAVGLLRQRARWDRDALRIRSMMYGELSFFHPLERLPDTLQRLDFIVFDLIPTMSLPFY
SIYIVILFGPAHAILFIAAIYFLLLWISLFNMALAFVLFSRSPSFFSLGAAFIFPFYQGIYMKCARFVSYSSEILFATSR
RDDYVPPRVRRALFADEVGKVVS
>Mature_423_residues
MFAMLYVIADTNWLLLAFSALMFDLPRYTFSLLSWSLVGIFRSSRPGDRRVEAAVSVIIPTFNGGSGLAPTIASLRQQTL
SPLEIIIVDDGSTDDTRAVANRARQDGLVDMVICHGTRCGRSAAINAAARFASGDLIFTIDADTVLERDAIARLANAFND
PRVAGACGNIAIRNESASLWTGLQSVEYMMSISAGKSILDVVGAIACLSGACSMYRRDVFARQGGLDVGPGEDLEFSLRL
RRLGYRVRFVPDAWAETDGPVAAVGLLRQRARWDRDALRIRSMMYGELSFFHPLERLPDTLQRLDFIVFDLIPTMSLPFY
SIYIVILFGPAHAILFIAAIYFLLLWISLFNMALAFVLFSRSPSFFSLGAAFIFPFYQGIYMKCARFVSYSSEILFATSR
RDDYVPPRVRRALFADEVGKVVS

Specific function: Involved in the synthesis of Nod factor, a sulfated N- acyl-beta-1,4-tetrasaccharide of N-acetylglucosamine which initiates a series of events in the host plant species leading eventually to nodulation [H]

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nodC/HAS family [H]

Homologues:

Organism=Homo sapiens, GI20302153, Length=210, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=6e-13,
Organism=Escherichia coli, GI1787259, Length=222, Percent_Identity=31.5315315315315, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1786560, Length=222, Percent_Identity=27.9279279279279, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 46905; Mature: 46905

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAMLYVIADTNWLLLAFSALMFDLPRYTFSLLSWSLVGIFRSSRPGDRRVEAAVSVIIP
CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEEE
TFNGGSGLAPTIASLRQQTLSPLEIIIVDDGSTDDTRAVANRARQDGLVDMVICHGTRCG
ECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
RSAAINAAARFASGDLIFTIDADTVLERDAIARLANAFNDPRVAGACGNIAIRNESASLW
CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHH
TGLQSVEYMMSISAGKSILDVVGAIACLSGACSMYRRDVFARQGGLDVGPGEDLEFSLRL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
RRLGYRVRFVPDAWAETDGPVAAVGLLRQRARWDRDALRIRSMMYGELSFFHPLERLPDT
HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LQRLDFIVFDLIPTMSLPFYSIYIVILFGPAHAILFIAAIYFLLLWISLFNMALAFVLFS
HHHHHHHHHHHHHHCCCCHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RSPSFFSLGAAFIFPFYQGIYMKCARFVSYSSEILFATSRRDDYVPPRVRRALFADEVGK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
VVS
HCC
>Mature Secondary Structure
MFAMLYVIADTNWLLLAFSALMFDLPRYTFSLLSWSLVGIFRSSRPGDRRVEAAVSVIIP
CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEEEE
TFNGGSGLAPTIASLRQQTLSPLEIIIVDDGSTDDTRAVANRARQDGLVDMVICHGTRCG
ECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
RSAAINAAARFASGDLIFTIDADTVLERDAIARLANAFNDPRVAGACGNIAIRNESASLW
CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHH
TGLQSVEYMMSISAGKSILDVVGAIACLSGACSMYRRDVFARQGGLDVGPGEDLEFSLRL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
RRLGYRVRFVPDAWAETDGPVAAVGLLRQRARWDRDALRIRSMMYGELSFFHPLERLPDT
HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LQRLDFIVFDLIPTMSLPFYSIYIVILFGPAHAILFIAAIYFLLLWISLFNMALAFVLFS
HHHHHHHHHHHHHHCCCCHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RSPSFFSLGAAFIFPFYQGIYMKCARFVSYSSEILFATSRRDDYVPPRVRRALFADEVGK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
VVS
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2615763; 8146173 [H]