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The map label for this gene is ybhD [H]

Identifier: 218531814

GI number: 218531814

Start: 4084684

End: 4085574

Strand: Reverse

Name: ybhD [H]

Synonym: Mchl_3890

Alternate gene names: 218531814

Gene position: 4085574-4084684 (Counterclockwise)

Preceding gene: 218531822

Following gene: 218531812

Centisome position: 70.71

GC content: 71.6

Gene sequence:

>891_bases
ATGCGCTTCGATCTCGTCGATCTGAACCTGTTCCGCCACGTCGTCGAGGCCGGTTCGATCACCCATGGGGCCGAGCGGGC
GAACCTCGCGCTCGCCGCCGCCTCGGCGCGGGTGCGGGCGATGGAGGCGTCGCTCGGCGCGGCACTCCTCGTGCGCGGGC
GCCAGGGCGTGACGGTGACGCCCGCCGGCCGCACCCTGCTGGCGCATGCCCGCGAGATCATGGGCCAGATCGAGCGGCTG
CAAGGCGATCTTTCCGTGTTCGCGGGCGGCGCGGTCGGCCAGATCCGGGTTCTGTCGAACACCAACGCGCTCACCGAATT
CCTGCCCGAGGCTCTCTCTGCCTACCTCGCCCTGCATACCGGCGTCAGCGTCGATATCGAGGAGCGGACATCCGACGAGA
TCGTCGGCATGGTGGCCGACGGGGCCGCCGATCTCGGCATCGTCGCGGGCACCGTCGATACCGGCACGCTCCAGACCTTC
CCCTTCCGCCACGACCGCTTCGTGGTGGTGGTCGCCGCCGGCCACCCGCTCGCCGACCGCGACAGCCTCGGCTTCGCGGA
GGTGCTGGAGCACGATCTCGTCGGCCTCGACCGGCCGAGCGCCCTGACCCGCTTCCTCGCGGCCAAAGCCTCCCGCATCG
GCCGGCCGATGCGGCTGCGGGTGCAGTTGCGCAGCTTCGATGCGGTCTGCCGCCTCGTGGAATGCGGCGTCGGCCTCGGC
ATCGTGCCGGAGACCACGGCGCGGCGGGCCAAGCGCACGATGAGCATCGCGCCCGTCCCGCTGGAGGATCCCTGGGCGGC
GCGCGACCTCAAGCTCTGCCTGCGGGATCTGGCGGGCCTGCCGCCCTTCGCGCAGGATTTCGTGGCGCATCTGCGTGCAG
CCGACGCATGA

Upstream 100 bases:

>100_bases
GGTGCCTCGCTCACGCTCTCGTGATAGGCGTCATGACCGATCCTTGCTCCATCCCACGCGAATGCGGGGCCAGAGAGCGC
CTTGTCGAACTCAACCTGTG

Downstream 100 bases:

>100_bases
GGCGCCGTCGGGTCAGGTGCCGGCGAGCGTGCCGACCAGCAGCTTCACGTTCAGCACGACGATGATGCCGGCGATGACCC
AGGACAGCCCCTTCAGCCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MRFDLVDLNLFRHVVEAGSITHGAERANLALAAASARVRAMEASLGAALLVRGRQGVTVTPAGRTLLAHAREIMGQIERL
QGDLSVFAGGAVGQIRVLSNTNALTEFLPEALSAYLALHTGVSVDIEERTSDEIVGMVADGAADLGIVAGTVDTGTLQTF
PFRHDRFVVVVAAGHPLADRDSLGFAEVLEHDLVGLDRPSALTRFLAAKASRIGRPMRLRVQLRSFDAVCRLVECGVGLG
IVPETTARRAKRTMSIAPVPLEDPWAARDLKLCLRDLAGLPPFAQDFVAHLRAADA

Sequences:

>Translated_296_residues
MRFDLVDLNLFRHVVEAGSITHGAERANLALAAASARVRAMEASLGAALLVRGRQGVTVTPAGRTLLAHAREIMGQIERL
QGDLSVFAGGAVGQIRVLSNTNALTEFLPEALSAYLALHTGVSVDIEERTSDEIVGMVADGAADLGIVAGTVDTGTLQTF
PFRHDRFVVVVAAGHPLADRDSLGFAEVLEHDLVGLDRPSALTRFLAAKASRIGRPMRLRVQLRSFDAVCRLVECGVGLG
IVPETTARRAKRTMSIAPVPLEDPWAARDLKLCLRDLAGLPPFAQDFVAHLRAADA
>Mature_296_residues
MRFDLVDLNLFRHVVEAGSITHGAERANLALAAASARVRAMEASLGAALLVRGRQGVTVTPAGRTLLAHAREIMGQIERL
QGDLSVFAGGAVGQIRVLSNTNALTEFLPEALSAYLALHTGVSVDIEERTSDEIVGMVADGAADLGIVAGTVDTGTLQTF
PFRHDRFVVVVAAGHPLADRDSLGFAEVLEHDLVGLDRPSALTRFLAAKASRIGRPMRLRVQLRSFDAVCRLVECGVGLG
IVPETTARRAKRTMSIAPVPLEDPWAARDLKLCLRDLAGLPPFAQDFVAHLRAADA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=26.2798634812287, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787879, Length=307, Percent_Identity=23.4527687296417, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI157672245, Length=257, Percent_Identity=22.568093385214, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786713, Length=251, Percent_Identity=27.8884462151394, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787806, Length=296, Percent_Identity=20.6081081081081, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=22.2222222222222, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31565; Mature: 31565

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDLVDLNLFRHVVEAGSITHGAERANLALAAASARVRAMEASLGAALLVRGRQGVTVT
CCEEEEHHHHHHHHHHHCCCCCCCHHHHEEEEHHHHHHHHHHHHCCEEEEEECCCCCEEC
PAGRTLLAHAREIMGQIERLQGDLSVFAGGAVGQIRVLSNTNALTEFLPEALSAYLALHT
CCCHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
GVSVDIEERTSDEIVGMVADGAADLGIVAGTVDTGTLQTFPFRHDRFVVVVAAGHPLADR
CCEEEECCCCCCHHEEEEECCCCCCEEEEECCCCCCEEECCCCCCCEEEEEECCCCCCCC
DSLGFAEVLEHDLVGLDRPSALTRFLAAKASRIGRPMRLRVQLRSFDAVCRLVECGVGLG
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCC
IVPETTARRAKRTMSIAPVPLEDPWAARDLKLCLRDLAGLPPFAQDFVAHLRAADA
CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFDLVDLNLFRHVVEAGSITHGAERANLALAAASARVRAMEASLGAALLVRGRQGVTVT
CCEEEEHHHHHHHHHHHCCCCCCCHHHHEEEEHHHHHHHHHHHHCCEEEEEECCCCCEEC
PAGRTLLAHAREIMGQIERLQGDLSVFAGGAVGQIRVLSNTNALTEFLPEALSAYLALHT
CCCHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
GVSVDIEERTSDEIVGMVADGAADLGIVAGTVDTGTLQTFPFRHDRFVVVVAAGHPLADR
CCEEEECCCCCCHHEEEEECCCCCCEEEEECCCCCCEEECCCCCCCEEEEEECCCCCCCC
DSLGFAEVLEHDLVGLDRPSALTRFLAAKASRIGRPMRLRVQLRSFDAVCRLVECGVGLG
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHCCCCCC
IVPETTARRAKRTMSIAPVPLEDPWAARDLKLCLRDLAGLPPFAQDFVAHLRAADA
CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]