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The map label for this gene is 218531332

Identifier: 218531332

GI number: 218531332

Start: 3584525

End: 3585406

Strand: Reverse

Name: 218531332

Synonym: Mchl_3400

Alternate gene names: NA

Gene position: 3585406-3584525 (Counterclockwise)

Preceding gene: 218531333

Following gene: 218531328

Centisome position: 62.05

GC content: 72.0

Gene sequence:

>882_bases
ATGCGGCCTGAGGCGTCCGACCCGTTCGAGGCGGAGCGGGCGCGGCTGACCCGCCTCGCCTACCGGATGCTCGGCTCCTT
CGCCGAAGCGGAGGATGTGGTTCAGAGTGCGTGGCTGCGCTGGCAGGCGGCGGACCGCGCCGCCGTCGCGGTGCCGGGTG
CCTTCCTGTCGCGCATCGTCACCCGGCTCTGCCTCGACACGATGAAATCGGCCCGCACCCGCCGGGAGGTCTATGTCGGG
CCGTGGCTGCCGGAACCCTCGCTCGACACGGAAGAGACGATCGACGGCGACGATCTCACCCTGACGCTGATGATGGCGCT
GGAGCGTCTCTCGCCCCTGGAACGGGCGGCTTTCCTCCTGCACGACGTGTTCGGCGTGCCCCTCGACGAGGTGGCGGCGA
CGCTGGGGCGGGCTGCTCCGGCAGTGCGCCAGCTCGCCGTGCGGGCCCGCCAGCATGTCCGCGCCGAGCGCCCGCGCTAC
CCCCTGCCGCCCGAGGAGGGCGAGCGGATTGCGCGCGCCTTCTTCGACGCCTCGCGCAGCGGCGACGTTGCCGCCCTGCG
CGGCCTGCTCTCGCAGACCGTGACGATGCGGGCGGATGGTGGCGGCAAGGTCATCGCCTTCCTCAACCCGATTCGCGGAA
TCGATCGCGTCCTGCGGCTGTTCTCGGGCCTCGCCCGCAAATATGCCGGGTCGCCCGCCACCCTTCTCCGCACCGTGCGG
GTCGACAGCCTGCCGGGCTTCGTCAGCCTGGAACGCGGCGGCGTCCTCCAAGTGACGGCACTGGAAATCCGCGACGGGCG
GATCGCGGGCATCTACATCACCCGCAACCCGGACAAGCTGCGCCGGGTGGCCGAGGCCATGGCGATGCCGCCCGCGCGCT
GA

Upstream 100 bases:

>100_bases
GCCGAACAGGTGCAGCTCACGCTCCAGATCGGCGCGATCAACCTGTGGAACCGGTTGCAGGTCGGCCTGCGCGGCGTACA
CCACCCCGACCCGTCCCGCG

Downstream 100 bases:

>100_bases
GCTCGGCCCTCACAGCGGAGCGGCCAGCACCTCTTCCAGGGTGACGCGGCGCCCGGCCTCCTCGAAGCGGCGCAGCAGCG
CCGATTGGCGGAAGCGCGGA

Product: RNA polymerase, sigma-24 subunit, ECF subfamily

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigJ; Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase; Sigma-70 Factor; RNA Polymerase ECF-Type Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor; ECF-Family Protein RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MRPEASDPFEAERARLTRLAYRMLGSFAEAEDVVQSAWLRWQAADRAAVAVPGAFLSRIVTRLCLDTMKSARTRREVYVG
PWLPEPSLDTEETIDGDDLTLTLMMALERLSPLERAAFLLHDVFGVPLDEVAATLGRAAPAVRQLAVRARQHVRAERPRY
PLPPEEGERIARAFFDASRSGDVAALRGLLSQTVTMRADGGGKVIAFLNPIRGIDRVLRLFSGLARKYAGSPATLLRTVR
VDSLPGFVSLERGGVLQVTALEIRDGRIAGIYITRNPDKLRRVAEAMAMPPAR

Sequences:

>Translated_293_residues
MRPEASDPFEAERARLTRLAYRMLGSFAEAEDVVQSAWLRWQAADRAAVAVPGAFLSRIVTRLCLDTMKSARTRREVYVG
PWLPEPSLDTEETIDGDDLTLTLMMALERLSPLERAAFLLHDVFGVPLDEVAATLGRAAPAVRQLAVRARQHVRAERPRY
PLPPEEGERIARAFFDASRSGDVAALRGLLSQTVTMRADGGGKVIAFLNPIRGIDRVLRLFSGLARKYAGSPATLLRTVR
VDSLPGFVSLERGGVLQVTALEIRDGRIAGIYITRNPDKLRRVAEAMAMPPAR
>Mature_293_residues
MRPEASDPFEAERARLTRLAYRMLGSFAEAEDVVQSAWLRWQAADRAAVAVPGAFLSRIVTRLCLDTMKSARTRREVYVG
PWLPEPSLDTEETIDGDDLTLTLMMALERLSPLERAAFLLHDVFGVPLDEVAATLGRAAPAVRQLAVRARQHVRAERPRY
PLPPEEGERIARAFFDASRSGDVAALRGLLSQTVTMRADGGGKVIAFLNPIRGIDRVLRLFSGLARKYAGSPATLLRTVR
VDSLPGFVSLERGGVLQVTALEIRDGRIAGIYITRNPDKLRRVAEAMAMPPAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32311; Mature: 32311

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS00083 INTRADIOL_DIOXYGENAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPEASDPFEAERARLTRLAYRMLGSFAEAEDVVQSAWLRWQAADRAAVAVPGAFLSRIV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHH
TRLCLDTMKSARTRREVYVGPWLPEPSLDTEETIDGDDLTLTLMMALERLSPLERAAFLL
HHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHH
HDVFGVPLDEVAATLGRAAPAVRQLAVRARQHVRAERPRYPLPPEEGERIARAFFDASRS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
GDVAALRGLLSQTVTMRADGGGKVIAFLNPIRGIDRVLRLFSGLARKYAGSPATLLRTVR
CCHHHHHHHHHHHHEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VDSLPGFVSLERGGVLQVTALEIRDGRIAGIYITRNPDKLRRVAEAMAMPPAR
HCCCCCEEEECCCCEEEEEEEEECCCEEEEEEEECCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRPEASDPFEAERARLTRLAYRMLGSFAEAEDVVQSAWLRWQAADRAAVAVPGAFLSRIV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHH
TRLCLDTMKSARTRREVYVGPWLPEPSLDTEETIDGDDLTLTLMMALERLSPLERAAFLL
HHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHH
HDVFGVPLDEVAATLGRAAPAVRQLAVRARQHVRAERPRYPLPPEEGERIARAFFDASRS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
GDVAALRGLLSQTVTMRADGGGKVIAFLNPIRGIDRVLRLFSGLARKYAGSPATLLRTVR
CCHHHHHHHHHHHHEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VDSLPGFVSLERGGVLQVTALEIRDGRIAGIYITRNPDKLRRVAEAMAMPPAR
HCCCCCEEEECCCCEEEEEEEEECCCEEEEEEEECCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA