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The map label for this gene is xerD [C]

Identifier: 218531296

GI number: 218531296

Start: 3546034

End: 3546663

Strand: Reverse

Name: xerD [C]

Synonym: Mchl_3357

Alternate gene names: 218531296

Gene position: 3546663-3546034 (Counterclockwise)

Preceding gene: 218531297

Following gene: 218531295

Centisome position: 61.38

GC content: 62.06

Gene sequence:

>630_bases
ATGCCCGAGGTCGTTACCGTTTCCACAAAACCGCGTGTTCCCTGGAACCGCGGCCATATCGTCGGCCCTAAACCGCCACT
GAAGCCGAAGCACATCTGGGCACTGCGCACGCGCCTGCAACTCGCCAACCGCACGCGAGATCTTGCCCTGTTCAACCTTG
CCGTCGACAGCAAGCTGCGCGGGTGTGATCTCGTCGGCCTGCGCGTGAGCGACATCTACCTGGGCGACGCCGTGCGTCTT
CGAGCGACCGTCTGCCAGCTCAAGACCGGCAGGCCGGTTCCGTTCGAGATCACCGAACCGACTCGCGAGGCTCTCGCGGC
TTGGTTGACTGCGCGCAGGTTGAAAGCTGGTGACTGGCTGTTTCCAAGCCGGAGTCGGCTCGGAGAGCATCTTACGACGC
GGCACTATAGTCGACTGGTCGACCGCTGGGTTGCCCTGATCGGCCTGGACCCTTCGGCTTTCGGCACGCACAGCCTGCGC
CGCACGAAGGTCGCGCTTGTCTACAAGCGAACCGGCAATATCCGAGCCTGCCAGCTGCTCCTTGGCCATACCAAGCTGGA
GAGTACGGTTCGCTATCTCGGCATTGAAGTTGACGACGCGCTGATCCTCTCAGAGCAAACCGAAATCTGA

Upstream 100 bases:

>100_bases
CGCCAATGTCGGCTTGTGCTGCAGAGAGCCGTCATTCGACGTTGAGTTCAGCGACAGCATCAGGTTCCTCATGACGAGCT
CCTCAACTCAGGAGCCTGTC

Downstream 100 bases:

>100_bases
ACCAAACGCCGCGGTCGAAAGGGCCGCGGTGTACCAGTAGGATGGTCGCCCCCCAGGGTGCTTGTGACCCGTTGCGGACC
TTCCGCCCCGCCTATTCGAA

Product: integrase family protein

Products: NA

Alternate protein names: Phage Integrase Family Protein; Phage Integrase; Site-Specific Recombinase Phage Integrase Family; Phage Integrase Family Site Specific Recombinase; DNA Integration/Recombination/Inversion Protein; Integrase; Recombinase; Site-Specific Recombinase Phage Integrase Family Protein; Tyrosine Recombinase XerD; Phage Integrase/Recombinase; Transposase; Fragmented Site-Specific Recombinase XerC/XerD; Phage Integrase Protein; Site-Specific Recombinase; Truncated Site-Specific Recombinase; DNA Recombinase

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MPEVVTVSTKPRVPWNRGHIVGPKPPLKPKHIWALRTRLQLANRTRDLALFNLAVDSKLRGCDLVGLRVSDIYLGDAVRL
RATVCQLKTGRPVPFEITEPTREALAAWLTARRLKAGDWLFPSRSRLGEHLTTRHYSRLVDRWVALIGLDPSAFGTHSLR
RTKVALVYKRTGNIRACQLLLGHTKLESTVRYLGIEVDDALILSEQTEI

Sequences:

>Translated_209_residues
MPEVVTVSTKPRVPWNRGHIVGPKPPLKPKHIWALRTRLQLANRTRDLALFNLAVDSKLRGCDLVGLRVSDIYLGDAVRL
RATVCQLKTGRPVPFEITEPTREALAAWLTARRLKAGDWLFPSRSRLGEHLTTRHYSRLVDRWVALIGLDPSAFGTHSLR
RTKVALVYKRTGNIRACQLLLGHTKLESTVRYLGIEVDDALILSEQTEI
>Mature_208_residues
PEVVTVSTKPRVPWNRGHIVGPKPPLKPKHIWALRTRLQLANRTRDLALFNLAVDSKLRGCDLVGLRVSDIYLGDAVRLR
ATVCQLKTGRPVPFEITEPTREALAAWLTARRLKAGDWLFPSRSRLGEHLTTRHYSRLVDRWVALIGLDPSAFGTHSLRR
TKVALVYKRTGNIRACQLLLGHTKLESTVRYLGIEVDDALILSEQTEI

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23612; Mature: 23481

Theoretical pI: Translated: 11.07; Mature: 11.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEVVTVSTKPRVPWNRGHIVGPKPPLKPKHIWALRTRLQLANRTRDLALFNLAVDSKLR
CCCEEEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
GCDLVGLRVSDIYLGDAVRLRATVCQLKTGRPVPFEITEPTREALAAWLTARRLKAGDWL
CCEEEEEEEEEEEECCHHHHHHHEEHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCC
FPSRSRLGEHLTTRHYSRLVDRWVALIGLDPSAFGTHSLRRTKVALVYKRTGNIRACQLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEEEECCCCEEEHHH
LGHTKLESTVRYLGIEVDDALILSEQTEI
HHHHHHHHHHHHHCCCCCCEEEECCCCCC
>Mature Secondary Structure 
PEVVTVSTKPRVPWNRGHIVGPKPPLKPKHIWALRTRLQLANRTRDLALFNLAVDSKLR
CCEEEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
GCDLVGLRVSDIYLGDAVRLRATVCQLKTGRPVPFEITEPTREALAAWLTARRLKAGDWL
CCEEEEEEEEEEEECCHHHHHHHEEHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCC
FPSRSRLGEHLTTRHYSRLVDRWVALIGLDPSAFGTHSLRRTKVALVYKRTGNIRACQLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEEEECCCCEEEHHH
LGHTKLESTVRYLGIEVDDALILSEQTEI
HHHHHHHHHHHHHCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA