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The map label for this gene is crtD [H]

Identifier: 218530904

GI number: 218530904

Start: 3115231

End: 3116730

Strand: Reverse

Name: crtD [H]

Synonym: Mchl_2953

Alternate gene names: 218530904

Gene position: 3116730-3115231 (Counterclockwise)

Preceding gene: 218530921

Following gene: 218530903

Centisome position: 53.94

GC content: 73.33

Gene sequence:

>1500_bases
GTGGCAGAAAAAAGCGTCATCGTGATCGGAGCCGGGATTGGCGGGCTCGCGGCGGCGCTGAGCCTCGCCGCCTCCGGCCA
CCACGTCACCGTCCTGGAGCGGGCGGCGCGCGTCGGCGGAAAGATGTGGACAGTGGCCGTGAGCGGAGTGCCGGTCGAGG
CGGGCCCCACCGTCTTCACCATGCGCTGGGTGTTCGAGGAGTTGTTCGCCGAGGCCGGCGCGGACCTCGGGTCGGAAATG
CGGCTGCGGCCGGCCACCCTGTTGGCCCGCCATGCCTGGAACGCGCACGAGCGGCTCGACCTGTTCGCGGATATCGAAAC
CTCGGCAGCGGCGATCGGCGCTTTCGCCGGCGCGCGCGAGGCGGAGGGCTATCGGCGGTTCTGCGCCCGTGCGGCCGAGG
TCTACCGCACGCTGGAAGGGCCGTTCATCCGCGCCGACCGGCCGAGCCCCGTCGATCTCGCCCAGCGCGTCGGCCTTTCG
GGCATCGGCAGCCTCTGGCGTATCCAGCCCTTCGCGACCCTGTGGTCGGCGCTCGGCGAGTATTTCCGTGATCCGCGCCT
GCACCAACTCTTCGGGCGCTACGCCACCTATTGCGGCGCCTCGCCGTTCGAGGCGCCGGCCACGCTGATGCTGGTCGCGC
ATGTGGAGCAGGCGGGCGTCTGGACTGTCGAGGGCGGCTTGAGCCGGCTCGCGCGCACGGTCGCGGATCTGGCCGAACGC
CGCGGCGCCACCCTGCGCACCGGCACGGATGTGGCGCGCATCCTGACCGAGCGCGGCCGCGTCGCGGGGGTCGAACTCGT
CGGCGGTGAGCGCATCGGTGCCGACGCGGTGATCGCCAACGCCGACGTGGCGGCGCTCGGCGGTTGCCTGCTCGGGCGCG
ATGCGGCGGCGGCCGGCGACCGGGTGCCCGCCCGCGAACGCTCGCTCTCGGCGCTCACCATCTGCACGACGGCGCGGGCG
AAGGGCTTCGACCTCGCGCACCACAGCGTCTTCTTCTCGTCCGATTACCGGGCAGAGTTCGACGCGATCCTGCGCGGCCG
CCACCTTCCGCCGGACCCGACCGTCTACGTCTGCGCGCAGGACCGGGACGGCGACGGCGGCTCGGCCCCTGACGGGCCGG
AACGCCTGCTCCTTCTCGTCAATGCCCCCGCCGATGGCGGGGAGCGCCGCTTCAGCCCCACGGAGATCGCCGCATGCGAG
ACGACCATCCATCGCAAGCTTTCGGCCTGCGGGCTCACGTTGGAGCCGACGGGACCGGGGACGATCACGACGCCGCAGGA
CTTCGCGGAGCTGTTTCCGGGGACGGGCGGAGCCCTCTACGGCCGGGCCTCGCATGGCTGGACGGCGACGTTCAAGCGGC
CGGGGGCGCGGACGCGGGTGCCGGGGCTCTATCTGGCGGGGGGCAGCGTGCATCCGGGGCCGGGGGTGCCGATGGCGGCG
CAGTCGGGCCGGCTCGCGGCGGCGGCACTGCGCGCGGACCTCGCTTCGACGGGGCGGTGA

Upstream 100 bases:

>100_bases
CCTCCCGTTGTCAGGATGACTTGCCTTGCATTTATGTCAACTATACTTGACACTGTTACGGGTCCGGATCAACTGCGATG
CGCCGCGGAGTGCATTTTCG

Downstream 100 bases:

>100_bases
CGCGCGGCGGCTACGTCTGGTGGTACGTCGACGCGGTGAGCGAGGACGGGCGCCAGGGGCTCACCGTGATCGCCTTCATC
GGCAGCGTGTTCTCGCCCTA

Product: phytoene desaturase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MAEKSVIVIGAGIGGLAAALSLAASGHHVTVLERAARVGGKMWTVAVSGVPVEAGPTVFTMRWVFEELFAEAGADLGSEM
RLRPATLLARHAWNAHERLDLFADIETSAAAIGAFAGAREAEGYRRFCARAAEVYRTLEGPFIRADRPSPVDLAQRVGLS
GIGSLWRIQPFATLWSALGEYFRDPRLHQLFGRYATYCGASPFEAPATLMLVAHVEQAGVWTVEGGLSRLARTVADLAER
RGATLRTGTDVARILTERGRVAGVELVGGERIGADAVIANADVAALGGCLLGRDAAAAGDRVPARERSLSALTICTTARA
KGFDLAHHSVFFSSDYRAEFDAILRGRHLPPDPTVYVCAQDRDGDGGSAPDGPERLLLLVNAPADGGERRFSPTEIAACE
TTIHRKLSACGLTLEPTGPGTITTPQDFAELFPGTGGALYGRASHGWTATFKRPGARTRVPGLYLAGGSVHPGPGVPMAA
QSGRLAAAALRADLASTGR

Sequences:

>Translated_499_residues
MAEKSVIVIGAGIGGLAAALSLAASGHHVTVLERAARVGGKMWTVAVSGVPVEAGPTVFTMRWVFEELFAEAGADLGSEM
RLRPATLLARHAWNAHERLDLFADIETSAAAIGAFAGAREAEGYRRFCARAAEVYRTLEGPFIRADRPSPVDLAQRVGLS
GIGSLWRIQPFATLWSALGEYFRDPRLHQLFGRYATYCGASPFEAPATLMLVAHVEQAGVWTVEGGLSRLARTVADLAER
RGATLRTGTDVARILTERGRVAGVELVGGERIGADAVIANADVAALGGCLLGRDAAAAGDRVPARERSLSALTICTTARA
KGFDLAHHSVFFSSDYRAEFDAILRGRHLPPDPTVYVCAQDRDGDGGSAPDGPERLLLLVNAPADGGERRFSPTEIAACE
TTIHRKLSACGLTLEPTGPGTITTPQDFAELFPGTGGALYGRASHGWTATFKRPGARTRVPGLYLAGGSVHPGPGVPMAA
QSGRLAAAALRADLASTGR
>Mature_498_residues
AEKSVIVIGAGIGGLAAALSLAASGHHVTVLERAARVGGKMWTVAVSGVPVEAGPTVFTMRWVFEELFAEAGADLGSEMR
LRPATLLARHAWNAHERLDLFADIETSAAAIGAFAGAREAEGYRRFCARAAEVYRTLEGPFIRADRPSPVDLAQRVGLSG
IGSLWRIQPFATLWSALGEYFRDPRLHQLFGRYATYCGASPFEAPATLMLVAHVEQAGVWTVEGGLSRLARTVADLAERR
GATLRTGTDVARILTERGRVAGVELVGGERIGADAVIANADVAALGGCLLGRDAAAAGDRVPARERSLSALTICTTARAK
GFDLAHHSVFFSSDYRAEFDAILRGRHLPPDPTVYVCAQDRDGDGGSAPDGPERLLLLVNAPADGGERRFSPTEIAACET
TIHRKLSACGLTLEPTGPGTITTPQDFAELFPGTGGALYGRASHGWTATFKRPGARTRVPGLYLAGGSVHPGPGVPMAAQ
SGRLAAAALRADLASTGR

Specific function: Converts hydroxyneurosporene to demethylspheroidene or methoxyneurosporene to spheroidene [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR000815
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 52451; Mature: 52320

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEKSVIVIGAGIGGLAAALSLAASGHHVTVLERAARVGGKMWTVAVSGVPVEAGPTVFT
CCCCCEEEEECCHHHHHHHHHHHCCCCEEHHHHHHHHCCCEEEEEEEECCCCCCCCCEEH
MRWVFEELFAEAGADLGSEMRLRPATLLARHAWNAHERLDLFADIETSAAAIGAFAGARE
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHEECCCHHHHHHHHHHCCHH
AEGYRRFCARAAEVYRTLEGPFIRADRPSPVDLAQRVGLSGIGSLWRIQPFATLWSALGE
HHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCCCCCCHHHEECHHHHHHHHHHH
YFRDPRLHQLFGRYATYCGASPFEAPATLMLVAHVEQAGVWTVEGGLSRLARTVADLAER
HHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHCCEEEEHHHHHHHHHHHHHHHHH
RGATLRTGTDVARILTERGRVAGVELVGGERIGADAVIANADVAALGGCLLGRDAAAAGD
CCCEEECCHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHHCCCHHCCCC
RVPARERSLSALTICTTARAKGFDLAHHSVFFSSDYRAEFDAILRGRHLPPDPTVYVCAQ
CCCCHHHCCCEEEEEEECCCCCCCCCHHEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEC
DRDGDGGSAPDGPERLLLLVNAPADGGERRFSPTEIAACETTIHRKLSACGLTLEPTGPG
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCC
TITTPQDFAELFPGTGGALYGRASHGWTATFKRPGARTRVPGLYLAGGSVHPGPGVPMAA
CCCCHHHHHHHCCCCCCEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCC
QSGRLAAAALRADLASTGR
CCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEKSVIVIGAGIGGLAAALSLAASGHHVTVLERAARVGGKMWTVAVSGVPVEAGPTVFT
CCCCEEEEECCHHHHHHHHHHHCCCCEEHHHHHHHHCCCEEEEEEEECCCCCCCCCEEH
MRWVFEELFAEAGADLGSEMRLRPATLLARHAWNAHERLDLFADIETSAAAIGAFAGARE
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHEECCCHHHHHHHHHHCCHH
AEGYRRFCARAAEVYRTLEGPFIRADRPSPVDLAQRVGLSGIGSLWRIQPFATLWSALGE
HHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCCCCCCHHHEECHHHHHHHHHHH
YFRDPRLHQLFGRYATYCGASPFEAPATLMLVAHVEQAGVWTVEGGLSRLARTVADLAER
HHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHCCEEEEHHHHHHHHHHHHHHHHH
RGATLRTGTDVARILTERGRVAGVELVGGERIGADAVIANADVAALGGCLLGRDAAAAGD
CCCEEECCHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHHCCCHHCCCC
RVPARERSLSALTICTTARAKGFDLAHHSVFFSSDYRAEFDAILRGRHLPPDPTVYVCAQ
CCCCHHHCCCEEEEEEECCCCCCCCCHHEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEC
DRDGDGGSAPDGPERLLLLVNAPADGGERRFSPTEIAACETTIHRKLSACGLTLEPTGPG
CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCC
TITTPQDFAELFPGTGGALYGRASHGWTATFKRPGARTRVPGLYLAGGSVHPGPGVPMAA
CCCCHHHHHHHCCCCCCEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCC
QSGRLAAAALRADLASTGR
CCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1612412; 7721699 [H]