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The map label for this gene is yjjV [C]

Identifier: 218235956

GI number: 218235956

Start: 207974

End: 208738

Strand: Direct

Name: yjjV [C]

Synonym: BCB4264_A0238

Alternate gene names: 218235956

Gene position: 207974-208738 (Clockwise)

Preceding gene: 218233706

Following gene: 218234674

Centisome position: 3.84

GC content: 33.33

Gene sequence:

>765_bases
ATGAAATGGATTGATAGTCATATACATGTTGATCAATATAAGGATGAAGAGAAGAGCAGATTACTGAAAGAGGTGGAAAA
TAGTAATGAAATAAAGGGGCTTATTGCAGTATCTATGAATTATCAATCTTGTAAGGAAACGTTATCTTTAGCGAAGAAGT
ATCCCTTTATATATCCAGCGATAGGGTTTCATCCAGAGCAACAGATTCATAAAGAAGAGTGTGACCAGATTTATCAACTT
ATTGAACAGAACGCAGAGGAAATTGTTGCGATTGGTGAAGTAGGTTTGCCCTATTATTTGAGGAAAGAAGATGAAAGAAT
TGCTGTAGATCCATACATAGCTGTATTGAAAAAATTTATAGAACTAGCTAGTAAGTATAATTTGCCGATTATATTACACG
CAGTTTATGAAGATGCTGACACTGTATGTGATTTGCTAGAGAAATATAAAGTTTCACGTGCACATTTCCATTGGTTTAAA
GGAAGTGATGAAACAATGAAACGGATGATGAAGAATGGTTATTATATTTCGATTACACCGGATGTTTTACATAAGGAGAA
GATTAGAAAAATTGTTTCGTATTATCCGCTTGAATATATGATGGTAGAAACAGATGGACCGTGGGAATTTCAAGAGGGTG
TTATAACGCATCCAAGAATGATTCGAGAGGTATTAAAGGAAATTAGTTCTATAAAAAACATATCCATTGATAAGGTCGCA
AAAACAATATATGGAAATACAAGTCGATTTTATTTGAAAGGATAG

Upstream 100 bases:

>100_bases
ATTGGATTATTTGATATCATAACAAACTTAATTGTTAAATAATATAGATGCTAAAACAAGAAAGGAAGTCCTTTCTTGTT
TTTTTTATGGGGGCATAAAG

Downstream 100 bases:

>100_bases
GAGAATTATAATTTTCATAATGTAACGGAAAAAGTAAAAGTTGAATTTATTTAATAAAATGCCACGGTTTGATATATGAA
AAAAACCACCGAGCGTTCCG

Product: putative deoxyribonuclease, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKWIDSHIHVDQYKDEEKSRLLKEVENSNEIKGLIAVSMNYQSCKETLSLAKKYPFIYPAIGFHPEQQIHKEECDQIYQL
IEQNAEEIVAIGEVGLPYYLRKEDERIAVDPYIAVLKKFIELASKYNLPIILHAVYEDADTVCDLLEKYKVSRAHFHWFK
GSDETMKRMMKNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFQEGVITHPRMIREVLKEISSIKNISIDKVA
KTIYGNTSRFYLKG

Sequences:

>Translated_254_residues
MKWIDSHIHVDQYKDEEKSRLLKEVENSNEIKGLIAVSMNYQSCKETLSLAKKYPFIYPAIGFHPEQQIHKEECDQIYQL
IEQNAEEIVAIGEVGLPYYLRKEDERIAVDPYIAVLKKFIELASKYNLPIILHAVYEDADTVCDLLEKYKVSRAHFHWFK
GSDETMKRMMKNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFQEGVITHPRMIREVLKEISSIKNISIDKVA
KTIYGNTSRFYLKG
>Mature_254_residues
MKWIDSHIHVDQYKDEEKSRLLKEVENSNEIKGLIAVSMNYQSCKETLSLAKKYPFIYPAIGFHPEQQIHKEECDQIYQL
IEQNAEEIVAIGEVGLPYYLRKEDERIAVDPYIAVLKKFIELASKYNLPIILHAVYEDADTVCDLLEKYKVSRAHFHWFK
GSDETMKRMMKNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFQEGVITHPRMIREVLKEISSIKNISIDKVA
KTIYGNTSRFYLKG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=223, Percent_Identity=27.8026905829596, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI110349734, Length=223, Percent_Identity=27.8026905829596, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI226061853, Length=230, Percent_Identity=26.9565217391304, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI14042943, Length=281, Percent_Identity=23.4875444839858, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI226061595, Length=183, Percent_Identity=27.8688524590164, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI226061614, Length=209, Percent_Identity=25.3588516746411, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=24.2307692307692, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=25.6704980842912, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI48994985, Length=241, Percent_Identity=26.1410788381743, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71980746, Length=260, Percent_Identity=24.6153846153846, Blast_Score=71, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29855; Mature: 29855

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWIDSHIHVDQYKDEEKSRLLKEVENSNEIKGLIAVSMNYQSCKETLSLAKKYPFIYPA
CCCCCCCCCHHHCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHCCEEECC
IGFHPEQQIHKEECDQIYQLIEQNAEEIVAIGEVGLPYYLRKEDERIAVDPYIAVLKKFI
CCCCCHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCEEECCCCEEEECHHHHHHHHHH
ELASKYNLPIILHAVYEDADTVCDLLEKYKVSRAHFHWFKGSDETMKRMMKNGYYISITP
HHHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCEEEEECH
DVLHKEKIRKIVSYYPLEYMMVETDGPWEFQEGVITHPRMIREVLKEISSIKNISIDKVA
HHHHHHHHHHHHHHCCEEEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
KTIYGNTSRFYLKG
HHHHCCCCEEEECC
>Mature Secondary Structure
MKWIDSHIHVDQYKDEEKSRLLKEVENSNEIKGLIAVSMNYQSCKETLSLAKKYPFIYPA
CCCCCCCCCHHHCCCHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHCCEEECC
IGFHPEQQIHKEECDQIYQLIEQNAEEIVAIGEVGLPYYLRKEDERIAVDPYIAVLKKFI
CCCCCHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCEEECCCCEEEECHHHHHHHHHH
ELASKYNLPIILHAVYEDADTVCDLLEKYKVSRAHFHWFKGSDETMKRMMKNGYYISITP
HHHHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCEEEEECH
DVLHKEKIRKIVSYYPLEYMMVETDGPWEFQEGVITHPRMIREVLKEISSIKNISIDKVA
HHHHHHHHHHHHHHCCEEEEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
KTIYGNTSRFYLKG
HHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]