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The map label for this gene is yvbU [H]

Identifier: 218235935

GI number: 218235935

Start: 3097327

End: 3098199

Strand: Reverse

Name: yvbU [H]

Synonym: BCB4264_A3211

Alternate gene names: 218235935

Gene position: 3098199-3097327 (Counterclockwise)

Preceding gene: 218231531

Following gene: 218234690

Centisome position: 57.17

GC content: 40.89

Gene sequence:

>873_bases
ATGAGTCTGACTAAGTTAGAAATCTTTCTGAAGACGGTTGAAATGGGGAACTTATCAAGAGCGGCCGAAGCACTGAATGT
GACTCAGTCAGGTGTCAGCCATGCGATTAGAAGTCTTGAATTGGAGTATGGATTTCAACTGTTATCCCGGAACAAAACAG
GTGTTCGATTAACAGGAAATGGTGAGCGTGTTTTAACGCATGTTCGTGAAGTAGTAAATCATAATGAGCGATTGAAGCAA
ACTGTTGCAGAGATTAATGGGATAGTGGCAGGAACCTTGCGCATCGGAACCTTTACAAGCGTTTCTATTCACTGGTTGCC
TGCAATCATTCATCGATTTCACTTGGAATATCCTCGAATTGAAATCAAATTAATGGAAGGTGATTATGGAATGATTGAAA
CGTGGATTCAACAAGGGGTGATTGACTTAGGTTTTATGTCACTACCGTCGTCTGGCCATCTAGAATCTATTCCACTAAGA
AAAGATCGAATGCTATGTGTCCTTCCTAAAAATCACTCATTAAGTAAACAATCTATAATTCAGTACGATCAGCTCAAGAA
AGAGCCTTTTATTATGCCTGCTTCTTCATGTGGTTACGATGTTAGGAAAGTATTACAAGCTGCTAGGGTTCATCTCGATA
TCCAATTTGAAACCGGTGATGATCATGCGATTGTCGCGATGGTGGAGAACGGGCTTGGAATCAGTGTCATGTCTGAACTT
GCATTACAAGGACAATGCGAAAATGTTACGGTTGTGGAATTGGAAGACAAACCTAAACGATCGCTTGGGTTGTCACTTAC
TTCAATTAAACACGCATTACCAGCGACAAAACGTTTTATCGAACATACCCAAAAATGGCTGGATGGCGATTGA

Upstream 100 bases:

>100_bases
TTTTATGTACTTAGTTTAATTGTGATTCAAGTATTAGTAAAACGAATATATGTAATGTTATACTTGAACAAAATTCATAC
ATGAGAAAGTAGGAGAATCG

Downstream 100 bases:

>100_bases
ATATAGAGGCAAGCAAAAGAAAATTAACATTTTATGATATTTAGTCCATATAGGGGTAGCACCACATCACTATCAAGCTA
AGAAAATACAACTACCCCCA

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSLTKLEIFLKTVEMGNLSRAAEALNVTQSGVSHAIRSLELEYGFQLLSRNKTGVRLTGNGERVLTHVREVVNHNERLKQ
TVAEINGIVAGTLRIGTFTSVSIHWLPAIIHRFHLEYPRIEIKLMEGDYGMIETWIQQGVIDLGFMSLPSSGHLESIPLR
KDRMLCVLPKNHSLSKQSIIQYDQLKKEPFIMPASSCGYDVRKVLQAARVHLDIQFETGDDHAIVAMVENGLGISVMSEL
ALQGQCENVTVVELEDKPKRSLGLSLTSIKHALPATKRFIEHTQKWLDGD

Sequences:

>Translated_290_residues
MSLTKLEIFLKTVEMGNLSRAAEALNVTQSGVSHAIRSLELEYGFQLLSRNKTGVRLTGNGERVLTHVREVVNHNERLKQ
TVAEINGIVAGTLRIGTFTSVSIHWLPAIIHRFHLEYPRIEIKLMEGDYGMIETWIQQGVIDLGFMSLPSSGHLESIPLR
KDRMLCVLPKNHSLSKQSIIQYDQLKKEPFIMPASSCGYDVRKVLQAARVHLDIQFETGDDHAIVAMVENGLGISVMSEL
ALQGQCENVTVVELEDKPKRSLGLSLTSIKHALPATKRFIEHTQKWLDGD
>Mature_289_residues
SLTKLEIFLKTVEMGNLSRAAEALNVTQSGVSHAIRSLELEYGFQLLSRNKTGVRLTGNGERVLTHVREVVNHNERLKQT
VAEINGIVAGTLRIGTFTSVSIHWLPAIIHRFHLEYPRIEIKLMEGDYGMIETWIQQGVIDLGFMSLPSSGHLESIPLRK
DRMLCVLPKNHSLSKQSIIQYDQLKKEPFIMPASSCGYDVRKVLQAARVHLDIQFETGDDHAIVAMVENGLGISVMSELA
LQGQCENVTVVELEDKPKRSLGLSLTSIKHALPATKRFIEHTQKWLDGD

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=27.1477663230241, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=24.7967479674797, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787879, Length=248, Percent_Identity=27.8225806451613, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI145693105, Length=284, Percent_Identity=23.943661971831, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790399, Length=272, Percent_Identity=26.1029411764706, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=185, Percent_Identity=27.5675675675676, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790262, Length=236, Percent_Identity=29.6610169491525, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787601, Length=139, Percent_Identity=28.7769784172662, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789204, Length=243, Percent_Identity=24.6913580246914, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787530, Length=258, Percent_Identity=27.1317829457364, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1786401, Length=124, Percent_Identity=33.8709677419355, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI2367136, Length=261, Percent_Identity=26.0536398467433, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788887, Length=196, Percent_Identity=30.6122448979592, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790208, Length=256, Percent_Identity=26.171875, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=26.6393442622951, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787806, Length=255, Percent_Identity=22.3529411764706, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081904, Length=149, Percent_Identity=29.5302013422819, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788297, Length=255, Percent_Identity=24.7058823529412, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789506, Length=200, Percent_Identity=23.5, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789173, Length=127, Percent_Identity=30.7086614173228, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32472; Mature: 32341

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTKLEIFLKTVEMGNLSRAAEALNVTQSGVSHAIRSLELEYGFQLLSRNKTGVRLTGN
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
GERVLTHVREVVNHNERLKQTVAEINGIVAGTLRIGTFTSVSIHWLPAIIHRFHLEYPRI
CHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEEEECCEEEEHHHHHHHHHHHHHCCCCCE
EIKLMEGDYGMIETWIQQGVIDLGFMSLPSSGHLESIPLRKDRMLCVLPKNHSLSKQSII
EEEEEECCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHH
QYDQLKKEPFIMPASSCGYDVRKVLQAARVHLDIQFETGDDHAIVAMVENGLGISVMSEL
HHHHHCCCCCEEECCCCCHHHHHHHHHHHEEEEEEEECCCCCEEEEEEECCCCHHHHHHH
ALQGQCENVTVVELEDKPKRSLGLSLTSIKHALPATKRFIEHTQKWLDGD
HHCCCCCCEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLTKLEIFLKTVEMGNLSRAAEALNVTQSGVSHAIRSLELEYGFQLLSRNKTGVRLTGN
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
GERVLTHVREVVNHNERLKQTVAEINGIVAGTLRIGTFTSVSIHWLPAIIHRFHLEYPRI
CHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEEEECCEEEEHHHHHHHHHHHHHCCCCCE
EIKLMEGDYGMIETWIQQGVIDLGFMSLPSSGHLESIPLRKDRMLCVLPKNHSLSKQSII
EEEEEECCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHH
QYDQLKKEPFIMPASSCGYDVRKVLQAARVHLDIQFETGDDHAIVAMVENGLGISVMSEL
HHHHHCCCCCEEECCCCCHHHHHHHHHHHEEEEEEEECCCCCEEEEEEECCCCHHHHHHH
ALQGQCENVTVVELEDKPKRSLGLSLTSIKHALPATKRFIEHTQKWLDGD
HHCCCCCCEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]