Click here to switch to the map view.

The map label for this gene is recA [H]

Identifier: 218235829

GI number: 218235829

Start: 3795395

End: 3796426

Strand: Reverse

Name: recA [H]

Synonym: BCB4264_A3878

Alternate gene names: 218235829

Gene position: 3796426-3795395 (Counterclockwise)

Preceding gene: 218231517

Following gene: 218235473

Centisome position: 70.06

GC content: 40.99

Gene sequence:

>1032_bases
ATGAGTGATCGTCAAGCAGCGTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAGTTTCTACGGTTTCTAGTGGTTCTTTAGCACTTGATGTGGCACTAGGGGTAGGCGGAT
ATCCACGTGGCCGTATTATCGAAATTTACGGACCTGAAAGTTCAGGTAAAACGACAGTTTCATTACATGCAATTGCAGAA
GTACAACGTCAAGGTGGACAAGCAGCATTCATCGATGCGGAGCACGCAATGGATCCTGTATATGCACAAAAATTAGGCGT
TAACATAGATGAATTACTATTATCACAGCCTGATACAGGGGAGCAAGGATTAGAAATCGCGGAAGCACTTGTACGAAGTG
GTGCGGTTGACATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCAGAGATTGAAGGCGACATGGGTGACTCA
CACGTAGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAGCTTTCAGGAGCAATCAACAAATCAAAAACAATTGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTTCGTCTTGAAGTGCGTCGTGCGGAGCAATTAAAGCAAGGTAACGACATCGTTGGTAATAAAACA
AAAGTAAAAGTAGTGAAAAATAAAGTAGCACCACCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTGGATATGGCTTCTGAGCTTGATATCGTTCAAAAGAGCGGTGCTTGGTATTCTTATAATGAAG
AACGCCTAGGACAAGGTCGTGAAAATTCGAAGCAGTTCTTAAAAGAAAATACAGATTTAAGAGAAGAAATTGCCTTCTTT
ATTCGTGAGCATCACGGAATTAGTGAAGATTCTGGTGCTGAGGGCGTAGAAGATCCAACTCTTCTTGATTAA

Upstream 100 bases:

>100_bases
TAGAAAATAAAAAAATCGAATAAATGTTCGATTTTTGTTGGCAAATTGAATTGAAAATAGGTATAATAAGATTAGCAATT
CAGTTAAGGAGGAATTTTGA

Downstream 100 bases:

>100_bases
AAAAATAAAAGACACGGCCTCGTGTCTTTTATTTTTTTATCTACTATTAAGGAGCATAATATTATAGATAAAAAATATTT
TTTTACTTCAAATGCGTTGT

Product: recombinase A

Products: NA

Alternate protein names: Recombinase A [H]

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEGVEDPTLLD

Sequences:

>Translated_343_residues
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
IREHHGISEDSGAEGVEDPTLLD
>Mature_342_residues
SDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAEV
QRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSH
VGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTK
VKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFI
REHHGISEDSGAEGVEDPTLLD

Specific function: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family [H]

Homologues:

Organism=Escherichia coli, GI1789051, Length=321, Percent_Identity=62.9283489096573, Blast_Score=431, Evalue=1e-122,

Paralogues:

None

Copy number: 1548 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800-1200 (L-broth) 40,000-60,000 (L-broth + Nalidixate) 4,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013765
- InterPro:   IPR020584
- InterPro:   IPR020588
- InterPro:   IPR020587 [H]

Pfam domain/function: PF00154 RecA [H]

EC number: NA

Molecular weight: Translated: 37280; Mature: 37149

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS00321 RECA_1 ; PS50162 RECA_2 ; PS50163 RECA_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRII
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEE
EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG
EEECCCCCCCEEEEHHHHHHHHHCCCCEEEEEHHHHCCHHHHHHHCCCHHHHHHCCCCCC
EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI
HHHHHHHHHHHHCCCEEEEEECHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
CCCCEEEHHHHHHHHHHCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCE
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR
EEEEEHHCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHCCCC
ENSKQFLKENTDLREEIAFFIREHHGISEDSGAEGVEDPTLLD
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTVSSGSLALDVALGVGGYPRGRII
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEE
EIYGPESSGKTTVSLHAIAEVQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTG
EEECCCCCCCEEEEHHHHHHHHHCCCCEEEEEHHHHCCHHHHHHHCCCHHHHHHCCCCCC
EQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAI
HHHHHHHHHHHHCCCEEEEEECHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
NKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
CCCCEEEHHHHHHHHHHCEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCE
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGR
EEEEEHHCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHCCCC
ENSKQFLKENTDLREEIAFFIREHHGISEDSGAEGVEDPTLLD
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA