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The map label for this gene is yjcF [C]

Identifier: 218235816

GI number: 218235816

Start: 3173362

End: 3174075

Strand: Reverse

Name: yjcF [C]

Synonym: BCB4264_A3289

Alternate gene names: 218235816

Gene position: 3174075-3173362 (Counterclockwise)

Preceding gene: 218233148

Following gene: 218235115

Centisome position: 58.57

GC content: 34.03

Gene sequence:

>714_bases
ATGAATGAGAATGGTAATGATAGAATAAGAGTCATGGAAATATTAAATAGATCTCAATACAATGATGAGGTTATAGATGG
ACTAGATATGAGTGATTTAGATCTTACTTTTTCAGATTTGTCAGAGGTGATGGCAGAGGGTATCATGGCAAAACAAGTCC
ATTTAAGAGCTTCTTCACTAATGAGAGCATCTTTTTTTGATTGTGATTTTGAGTTTGCTGATTTCAGGAGCTGTAATTTA
GAGGAAATACATATTGCAGATTGTAGATTTGGTGAAGCTAATTTCTCTAAAGCCAATATGAAATATGCAAAGGTAAATAT
AAGTAGTTGTTTTGAAACATGTTTTGATGAAGTTGATTTTTCATATGGAGAATTAGTTGGAACGATATTAAATCATGCTA
CTTTTCGACGAGCAAATTTATACAAAATAGATGCAAAACAGGCCGACTGTACGGGAACGGATTTCAGCAACGCGAATCTT
ACAGAAGGTAACTTTGAAAAAGCATATTTAGAAGATGCTAATTTATCAGAAGTAGATGCTAGAAATACAGATTTTACAAA
CGCGGATTTAACAGGAGCGAACCTTTTAAATGGGAATTTCACGGATGCGAATTTTACCGGTGCCAAACTAGACAATGTAG
TTTGGAAGGGAGCACAGGTAGAAGGAGCCAAGTTTGACGAAAATGTGAAGGAACAAATCTTAAAAATGATTTAA

Upstream 100 bases:

>100_bases
GCTATACCAAGTTTTGATGAAGATCAAATGGGTGTAACTTATTCTCCAAATATTGCTTGGAAGGACTATCTGAAAAGCTA
AATGAAAGGAGATCGTAATA

Downstream 100 bases:

>100_bases
ATATGATGGGAAGTATATACATTTGAGCACTCGAAAACCTATTATTGGTAGCGAGTGCTTTTTTCGTAGAGATATTAGAG
ATTACTAAATTAGTGAAAAT

Product: pentapeptide repeat containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNENGNDRIRVMEILNRSQYNDEVIDGLDMSDLDLTFSDLSEVMAEGIMAKQVHLRASSLMRASFFDCDFEFADFRSCNL
EEIHIADCRFGEANFSKANMKYAKVNISSCFETCFDEVDFSYGELVGTILNHATFRRANLYKIDAKQADCTGTDFSNANL
TEGNFEKAYLEDANLSEVDARNTDFTNADLTGANLLNGNFTDANFTGAKLDNVVWKGAQVEGAKFDENVKEQILKMI

Sequences:

>Translated_237_residues
MNENGNDRIRVMEILNRSQYNDEVIDGLDMSDLDLTFSDLSEVMAEGIMAKQVHLRASSLMRASFFDCDFEFADFRSCNL
EEIHIADCRFGEANFSKANMKYAKVNISSCFETCFDEVDFSYGELVGTILNHATFRRANLYKIDAKQADCTGTDFSNANL
TEGNFEKAYLEDANLSEVDARNTDFTNADLTGANLLNGNFTDANFTGAKLDNVVWKGAQVEGAKFDENVKEQILKMI
>Mature_237_residues
MNENGNDRIRVMEILNRSQYNDEVIDGLDMSDLDLTFSDLSEVMAEGIMAKQVHLRASSLMRASFFDCDFEFADFRSCNL
EEIHIADCRFGEANFSKANMKYAKVNISSCFETCFDEVDFSYGELVGTILNHATFRRANLYKIDAKQADCTGTDFSNANL
TEGNFEKAYLEDANLSEVDARNTDFTNADLTGANLLNGNFTDANFTGAKLDNVVWKGAQVEGAKFDENVKEQILKMI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 26608; Mature: 26608

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNENGNDRIRVMEILNRSQYNDEVIDGLDMSDLDLTFSDLSEVMAEGIMAKQVHLRASSL
CCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MRASFFDCDFEFADFRSCNLEEIHIADCRFGEANFSKANMKYAKVNISSCFETCFDEVDF
HHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCC
SYGELVGTILNHATFRRANLYKIDAKQADCTGTDFSNANLTEGNFEKAYLEDANLSEVDA
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCC
RNTDFTNADLTGANLLNGNFTDANFTGAKLDNVVWKGAQVEGAKFDENVKEQILKMI
CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHEECCCCCCCCCCCHHHHHHHHHHC
>Mature Secondary Structure
MNENGNDRIRVMEILNRSQYNDEVIDGLDMSDLDLTFSDLSEVMAEGIMAKQVHLRASSL
CCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MRASFFDCDFEFADFRSCNLEEIHIADCRFGEANFSKANMKYAKVNISSCFETCFDEVDF
HHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCC
SYGELVGTILNHATFRRANLYKIDAKQADCTGTDFSNANLTEGNFEKAYLEDANLSEVDA
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCC
RNTDFTNADLTGANLLNGNFTDANFTGAKLDNVVWKGAQVEGAKFDENVKEQILKMI
CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHEECCCCCCCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA