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The map label for this gene is yrkF [H]

Identifier: 218235754

GI number: 218235754

Start: 802856

End: 803416

Strand: Direct

Name: yrkF [H]

Synonym: BCB4264_A0830

Alternate gene names: 218235754

Gene position: 802856-803416 (Clockwise)

Preceding gene: 218232890

Following gene: 218235004

Centisome position: 14.82

GC content: 39.57

Gene sequence:

>561_bases
ATGAGTATAAAAGTGGATATGAGTTTAGATTGTAAAGGGTTAGCTTGTCCGATGCCGATTGTGAAAACGAAGAAGGCGAT
AGAAGGATTGGCATCAGGACAAGTGATTGAAATTAAGGCAACAGATAAAGGATCTACGGTAGATATACAAAGCTGGGCAA
ATAAAGTAGGGCATCAATATATCGGGACGAAACAAGAGGGCGATGTTTTGATGCATTACATTAGGAAAGCGCATGAGCAT
GAAGTGAATGAAGTAGCAAAGTATCCTCATACAATTACGAATGCAGAGTTGGAAGAGATATTATTAAGTGAGGAAGAGTG
TATTGTATTAGATGTTCGAGAAGCAGCGGAATTCGCTTTTGGTCATATTCCATCGGCCATTTCGATGCCGTTAGGAGAGT
TAGACAGTGCAGTGTTAGATGAGACGAAGCAAATTTATGTTGTTTGTCGAACTGGTAACCGTAGTGATGTAGCTTGCCAC
ATGTTGAAAGAGAAAGGTTATGCAAATGTGAAAAATGTCATTCCAGGCATGTTAGAGTGGCAAGGGAATATAGAGAAATA
A

Upstream 100 bases:

>100_bases
AAAAGCCGATAATCTGTCAAACGTAAGTATTGACAGATTTTCAAAAACATTTTAACATACCCCTACAGGTATGTGTATAT
AAATTATGGAGGAATCGACT

Downstream 100 bases:

>100_bases
ATTTTTTTGAATAAAAATATACCTATGGGGGTAATAAGATGAATGTTAAACCGTTACAAGCAAAAGATGTTGCAGAGAAA
GTTTTATTCGGAGAGTTATT

Product: rhodanese domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MSIKVDMSLDCKGLACPMPIVKTKKAIEGLASGQVIEIKATDKGSTVDIQSWANKVGHQYIGTKQEGDVLMHYIRKAHEH
EVNEVAKYPHTITNAELEEILLSEEECIVLDVREAAEFAFGHIPSAISMPLGELDSAVLDETKQIYVVCRTGNRSDVACH
MLKEKGYANVKNVIPGMLEWQGNIEK

Sequences:

>Translated_186_residues
MSIKVDMSLDCKGLACPMPIVKTKKAIEGLASGQVIEIKATDKGSTVDIQSWANKVGHQYIGTKQEGDVLMHYIRKAHEH
EVNEVAKYPHTITNAELEEILLSEEECIVLDVREAAEFAFGHIPSAISMPLGELDSAVLDETKQIYVVCRTGNRSDVACH
MLKEKGYANVKNVIPGMLEWQGNIEK
>Mature_185_residues
SIKVDMSLDCKGLACPMPIVKTKKAIEGLASGQVIEIKATDKGSTVDIQSWANKVGHQYIGTKQEGDVLMHYIRKAHEHE
VNEVAKYPHTITNAELEEILLSEEECIVLDVREAAEFAFGHIPSAISMPLGELDSAVLDETKQIYVVCRTGNRSDVACHM
LKEKGYANVKNVIPGMLEWQGNIEK

Specific function: Unknown

COG id: COG0425

COG function: function code O; Predicted redox protein, regulator of disulfide bond formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR001455 [H]

Pfam domain/function: PF00581 Rhodanese; PF01206 SirA [H]

EC number: NA

Molecular weight: Translated: 20565; Mature: 20434

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50206 RHODANESE_3 ; PS01148 UPF0033

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKVDMSLDCKGLACPMPIVKTKKAIEGLASGQVIEIKATDKGSTVDIQSWANKVGHQY
CEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHHHHH
IGTKQEGDVLMHYIRKAHEHEVNEVAKYPHTITNAELEEILLSEEECIVLDVREAAEFAF
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHH
GHIPSAISMPLGELDSAVLDETKQIYVVCRTGNRSDVACHMLKEKGYANVKNVIPGMLEW
HCCCHHHHCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCCCHHHHCCCCEEC
QGNIEK
CCCCCC
>Mature Secondary Structure 
SIKVDMSLDCKGLACPMPIVKTKKAIEGLASGQVIEIKATDKGSTVDIQSWANKVGHQY
EEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHHHHH
IGTKQEGDVLMHYIRKAHEHEVNEVAKYPHTITNAELEEILLSEEECIVLDVREAAEFAF
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHH
GHIPSAISMPLGELDSAVLDETKQIYVVCRTGNRSDVACHMLKEKGYANVKNVIPGMLEW
HCCCHHHHCCHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCCCHHHHCCCCEEC
QGNIEK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]