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The map label for this gene is ybfP [H]

Identifier: 218235537

GI number: 218235537

Start: 188911

End: 189810

Strand: Direct

Name: ybfP [H]

Synonym: BCB4264_A0216

Alternate gene names: 218235537

Gene position: 188911-189810 (Clockwise)

Preceding gene: 218232913

Following gene: 218232471

Centisome position: 3.49

GC content: 35.78

Gene sequence:

>900_bases
ATGCATGAAGAATATAAAGAGATAATAAAAAAATCAATTGAATATATAGAGAATCACTTACATGAGGAGCTTACAACAGA
AAGAGTGGCATCTCACAGTGCAGTATCGATGTACCATTTTCATCGCATCTTTCAAAGATATGTTGGGATGAGTGTAACGG
ATTATATTCGAAAGAGAAGGTTAACTCATGCTGCGCAAGTTTTAGTGTCAACGGAGAAAGCTGTTATTGATATTGCACTG
CAATACGGTTTTTCCTCACAAGAGGCATTTACGAGAGCTTTTAAAAGAATGTTTCAATTGCCACCAAAGAAATATCGAAA
GTACTTTCAGTCATTTTATATAGAAAGAGAGGGTGTTTCAATGCAAAAAGGTATACCGAAAGGATGGATCTTAAGTGGGA
GTCATCCTGCTGAATATGAGATGGGTTTAGATTATGAAGTTGTCCATCAAGGAAAAGTATCTGCATACATAAAAGCAAAA
GAGAATGTTACGCACGGAGGATTTTCAACATTAATGCAAATGTTCAGAGCGGATAAATATGTAGGGAAGAGATTACGTTT
TACAGCATTTGTTAAGAGTGAAAATGTAAGAGATTGGGCAGGATTGTGGATGCGAGTAGATGGAAAAGATACAGAACCGC
TCGCTATGGATAATATGCAAAATCGCCCCATTAAAAATACGAATAACTGGCAATCGTACTCGGTTGTATTAGATATAAAA
GAAGAAGCACTTGGTATTGCATTTGGTGTTTTATTATCAGGAGAAGGTTGTGTGTGGCTAGATAGTATTCGATTTGATGA
AGTAGATGAAAAAATTCCTTCAACAGATTTGGCAGAGAACTTTTATGAAACACTTTTAGAAGAGCCGGTGAATCTGCAAT
TTGAAGAAGTAGAAAAATAA

Upstream 100 bases:

>100_bases
AATAAATTATTATCCTGCAGTCACGAGGGCTAATCCGCAATTTAAATCAAAAACGATTTGTATGTATATGGTAAATTGAA
ATTGTGAGGGAGGGGCTAAA

Downstream 100 bases:

>100_bases
AAAACAAGGAGAAAAGATATGCTCAAATATGTAAAACTAATAAGTATTAGTTTAGTAATATCGTCTTGTATTATGGGAAT
TAATTATTTAGTTAGCTATC

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MHEEYKEIIKKSIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYVGMSVTDYIRKRRLTHAAQVLVSTEKAVIDIAL
QYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAK
ENVTHGGFSTLMQMFRADKYVGKRLRFTAFVKSENVRDWAGLWMRVDGKDTEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
EEALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPSTDLAENFYETLLEEPVNLQFEEVEK

Sequences:

>Translated_299_residues
MHEEYKEIIKKSIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYVGMSVTDYIRKRRLTHAAQVLVSTEKAVIDIAL
QYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAK
ENVTHGGFSTLMQMFRADKYVGKRLRFTAFVKSENVRDWAGLWMRVDGKDTEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
EEALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPSTDLAENFYETLLEEPVNLQFEEVEK
>Mature_299_residues
MHEEYKEIIKKSIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYVGMSVTDYIRKRRLTHAAQVLVSTEKAVIDIAL
QYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVSMQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAK
ENVTHGGFSTLMQMFRADKYVGKRLRFTAFVKSENVRDWAGLWMRVDGKDTEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
EEALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPSTDLAENFYETLLEEPVNLQFEEVEK

Specific function: Probable transcriptional regulator [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=100, Percent_Identity=41, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=38.7755102040816, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1790497, Length=102, Percent_Identity=37.2549019607843, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790559, Length=102, Percent_Identity=30.3921568627451, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34855; Mature: 34855

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEEYKEIIKKSIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYVGMSVTDYIRKRR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LTHAAQVLVSTEKAVIDIALQYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVS
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
MQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAKENVTHGGFSTLMQMFRADKY
HHHCCCCCEEECCCCCCCCCCCCCHHEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
VGKRLRFTAFVKSENVRDWAGLWMRVDGKDTEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
HCCHHEEEEEEECCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEH
EEALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPSTDLAENFYETLLEEPVNLQFEEVEK
HHHHHHHHHHEECCCCCEEEECCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure
MHEEYKEIIKKSIEYIENHLHEELTTERVASHSAVSMYHFHRIFQRYVGMSVTDYIRKRR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LTHAAQVLVSTEKAVIDIALQYGFSSQEAFTRAFKRMFQLPPKKYRKYFQSFYIEREGVS
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
MQKGIPKGWILSGSHPAEYEMGLDYEVVHQGKVSAYIKAKENVTHGGFSTLMQMFRADKY
HHHCCCCCEEECCCCCCCCCCCCCHHEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
VGKRLRFTAFVKSENVRDWAGLWMRVDGKDTEPLAMDNMQNRPIKNTNNWQSYSVVLDIK
HCCHHEEEEEEECCCCCHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEH
EEALGIAFGVLLSGEGCVWLDSIRFDEVDEKIPSTDLAENFYETLLEEPVNLQFEEVEK
HHHHHHHHHHEECCCCCEEEECCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]