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The map label for this gene is rbsC [H]

Identifier: 218235529

GI number: 218235529

Start: 689875

End: 690810

Strand: Direct

Name: rbsC [H]

Synonym: BCB4264_A0700

Alternate gene names: 218235529

Gene position: 689875-690810 (Clockwise)

Preceding gene: 218233360

Following gene: 218234989

Centisome position: 12.73

GC content: 38.25

Gene sequence:

>936_bases
ATGGCTAAGAAGGGGAATGTATTACAACAACTTGGTTCTTTAATTGGTTTAGTATTAATTATCGTCGTAATTACAGCTTT
AAATCCAGCGTTTATTGAAATTCCAAATTTATTTAATATACTGCGTCAAGTATCGATTAATGCGCTTATTGCATTCGGAA
TGACCTTCGTAATTTTAACAGGGGGTATTGACTTATCGGTAGGTTCTATTTTAGCATTATCAAGTGCACTTGTTGCTGGA
ATGATGGCAAGTGGCATGGATCCGTTCCTTGCAATGGCAGTTGGACTATTAGCAGGTCTTGTAATGGGAATTGTAAACGG
TATCATCATTGCGAAAGGAAAAGTAGCTCCATTTATTGCAACTTTAGCAACAATGACTATTTTTCGTGGGTTGACGCTTG
TTTATATGGACGGACGTCCGATCACTGGTCTTGGTGATCATTTAATGTTCCAAATGTTTGGCCGCGGTTATTTTCTTGGT
ATTCCGGTACCAGCTGTTACAATGATGATCGCTTTCGCAGTACTGTACTTCATTTTGAAGAAAACGACATTTGGTCGCCG
TACATTTGCAATTGGTGGAAATGAAGAAGCAGCAGCACTATCAGGTATTAATGTTACGAGAATTAAAGTAATGATTTACG
GTCTTTCCGGAATTTTGGCAGCGCTTGCAGGTATTGTCTTAACATCACGATTAGATTCTGCACAGCCGACTGCAGGTACT
TCTTACGAATTAGATGCAATTGCAGCAGTTGTATTAGGTGGAACAAGTCTTTCTGGGGGAAGAGGATGGATTGTTGGTAC
ATTCATCGGTGTACTTATTATTGGTGTACTAAATAACGGTTTAAATTTATTAGGTGTATCTTCTTTCTTCCAACAAGTTG
TAAAAGGACTTGTAATCTTACTAGCTGTATTAATTGATCGCAGAAAAGAAGCGTAA

Upstream 100 bases:

>100_bases
GAGTTCTTGTTATTCATGAAGGAAAAGTCGGCGGAATTTTAGGGAAAGATGAGGCATCACAAGAGTCTATTATGGCACTA
GCTACAGGGGGAGAGTAAGG

Downstream 100 bases:

>100_bases
TGGAGGGACAGTTCATGAAGAAATGGTTACTTATACTCGTTGCATGTATTATGGTCGTTACTGCTGGTTGTTCAATGGAA
CCACCAGAATGGGCAAAGGA

Product: ribose ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MAKKGNVLQQLGSLIGLVLIIVVITALNPAFIEIPNLFNILRQVSINALIAFGMTFVILTGGIDLSVGSILALSSALVAG
MMASGMDPFLAMAVGLLAGLVMGIVNGIIIAKGKVAPFIATLATMTIFRGLTLVYMDGRPITGLGDHLMFQMFGRGYFLG
IPVPAVTMMIAFAVLYFILKKTTFGRRTFAIGGNEEAAALSGINVTRIKVMIYGLSGILAALAGIVLTSRLDSAQPTAGT
SYELDAIAAVVLGGTSLSGGRGWIVGTFIGVLIIGVLNNGLNLLGVSSFFQQVVKGLVILLAVLIDRRKEA

Sequences:

>Translated_311_residues
MAKKGNVLQQLGSLIGLVLIIVVITALNPAFIEIPNLFNILRQVSINALIAFGMTFVILTGGIDLSVGSILALSSALVAG
MMASGMDPFLAMAVGLLAGLVMGIVNGIIIAKGKVAPFIATLATMTIFRGLTLVYMDGRPITGLGDHLMFQMFGRGYFLG
IPVPAVTMMIAFAVLYFILKKTTFGRRTFAIGGNEEAAALSGINVTRIKVMIYGLSGILAALAGIVLTSRLDSAQPTAGT
SYELDAIAAVVLGGTSLSGGRGWIVGTFIGVLIIGVLNNGLNLLGVSSFFQQVVKGLVILLAVLIDRRKEA
>Mature_310_residues
AKKGNVLQQLGSLIGLVLIIVVITALNPAFIEIPNLFNILRQVSINALIAFGMTFVILTGGIDLSVGSILALSSALVAGM
MASGMDPFLAMAVGLLAGLVMGIVNGIIIAKGKVAPFIATLATMTIFRGLTLVYMDGRPITGLGDHLMFQMFGRGYFLGI
PVPAVTMMIAFAVLYFILKKTTFGRRTFAIGGNEEAAALSGINVTRIKVMIYGLSGILAALAGIVLTSRLDSAQPTAGTS
YELDAIAAVVLGGTSLSGGRGWIVGTFIGVLIIGVLNNGLNLLGVSSFFQQVVKGLVILLAVLIDRRKEA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=305, Percent_Identity=55.0819672131148, Blast_Score=303, Evalue=1e-83,
Organism=Escherichia coli, GI1788896, Length=299, Percent_Identity=41.4715719063545, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI145693152, Length=306, Percent_Identity=40.5228758169935, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1790524, Length=301, Percent_Identity=42.1926910299003, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1789992, Length=349, Percent_Identity=34.9570200573066, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI87082395, Length=287, Percent_Identity=36.5853658536585, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1788471, Length=324, Percent_Identity=38.8888888888889, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787794, Length=295, Percent_Identity=34.2372881355932, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI145693214, Length=256, Percent_Identity=39.0625, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1787793, Length=282, Percent_Identity=33.6879432624113, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32404; Mature: 32273

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKGNVLQQLGSLIGLVLIIVVITALNPAFIEIPNLFNILRQVSINALIAFGMTFVILT
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGIDLSVGSILALSSALVAGMMASGMDPFLAMAVGLLAGLVMGIVNGIIIAKGKVAPFIA
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHH
TLATMTIFRGLTLVYMDGRPITGLGDHLMFQMFGRGYFLGIPVPAVTMMIAFAVLYFILK
HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHH
KTTFGRRTFAIGGNEEAAALSGINVTRIKVMIYGLSGILAALAGIVLTSRLDSAQPTAGT
HCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SYELDAIAAVVLGGTSLSGGRGWIVGTFIGVLIIGVLNNGLNLLGVSSFFQQVVKGLVIL
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LAVLIDRRKEA
HHHHHHHHCCC
>Mature Secondary Structure 
AKKGNVLQQLGSLIGLVLIIVVITALNPAFIEIPNLFNILRQVSINALIAFGMTFVILT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGIDLSVGSILALSSALVAGMMASGMDPFLAMAVGLLAGLVMGIVNGIIIAKGKVAPFIA
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHH
TLATMTIFRGLTLVYMDGRPITGLGDHLMFQMFGRGYFLGIPVPAVTMMIAFAVLYFILK
HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHH
KTTFGRRTFAIGGNEEAAALSGINVTRIKVMIYGLSGILAALAGIVLTSRLDSAQPTAGT
HCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SYELDAIAAVVLGGTSLSGGRGWIVGTFIGVLIIGVLNNGLNLLGVSSFFQQVVKGLVIL
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
LAVLIDRRKEA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]