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The map label for this gene is yrvJ [H]

Identifier: 218235463

GI number: 218235463

Start: 1817875

End: 1819569

Strand: Direct

Name: yrvJ [H]

Synonym: BCB4264_A1909

Alternate gene names: 218235463

Gene position: 1817875-1819569 (Clockwise)

Preceding gene: 218236048

Following gene: 218230874

Centisome position: 33.55

GC content: 36.81

Gene sequence:

>1695_bases
ATGAAAAAGATTTTAGCTAGTGTAGCAGTAGCTTCTGTTACAGGAAGTGTATTTATTAGTACTGCTCAAGCGAAAAATAC
TGTTATACCAAAAGACACGAAGCATGAGCAAACGACTGATGTAGTAAAATATGAAAATCAAGTAACAGTAAATACAAATG
CTCTACGTGTCCGCACACAACCAAATATGTCTAGTGCAATAATGGGACGCGTGTATGAAGGAGAAGTTTTACAAGTTATT
GGAGAAGAAAACAGTTGGCTGAAAATTAATCATAAAGGAAAAACTGGCTATGTAAGTAGTGAATTTGTTTCGGGAAATAA
TGTATCAGCGAAGACAAATGTAAGCATGAGTCGTAGTAAAACTGTAACTGCTAATGTATTACGTGTTCGCACACAGCCAA
ATACGTCTAGTGCGATAATGGGGCGCGTATATGAAGGGAAAGCTTTACAAGTTATTGGAGAAGAAAACGGTTGGTTGAAA
ATTAATCATAATGGAGAAGTAGGTTATGTAAGCAGTCAATTTGTAATAGACGGTAGTTCAAATGGAAGCGACAATAACAA
TGGAAAAGTTCAAGTAGCGAGTGGCAATTACAAAGTTAACGTATCTTCTCTCCGCGTACGTACAGGTCCAAGTACTTCCC
ATGCAATTTTAGGCTCTATACATAAAGGACAAGTTGTTCAAGTAACTGGTGAAATTCAAGATTGGGTCAAAATTAACTAT
AGTGGACAAACTGCTTATATTAGTAAAGATTATATTTCAAAGAGTGGTTCTAATGCAAATGTAGACCAAACAAATGAACA
ACAAAAGAATGTTACGGTTCAAACTGACGGCACATACATTGTAAACGCTACTTCTTTACGTGTTCGCACGGGCCCTGCTA
CTTACCATAGTGTAATTGGTGGTGTATTAAACGGACGAATATTGCAAGTAACTGGCGTTGAAAATGGCTGGTTGAAAATT
AATCATAATGGAAGAACTGGTTATGTAAGTAGTGAATATGTAAAATTCGTTAAAGGAGGTACACCATCAAAACCTGAAAC
TAGTAATCTATCTACTGGGGCAACAGTTGGTGACTACTATGTTAACGTAAACGTGTTAAATGTAAGAAACGGCGCTGGTA
CAAATCATGGTGTAATTGGTGCATTATCAAAAGGAATAAAAGTACAGGTTCTATTTGAACAAAATGGCTGGTTGAAAATT
AATTACAACGGTAAAAACGGTTATGTATCAAGTGAATTTTTATCAAAAACAAGTGAGACTGATGCAGAGAAGCGGCGGCA
ATCCCAAGAGGTAAATAAAACAAATGACTTTATTCAACCAGCTGCAGGAAGATATACTTCTAGATTTGAGAAACGTGGTG
GGAAAATGCATCATGGATTAGATATTGCTGCTTCAGGAACAGTGCCGGTTGTTGCTGCCGCAGAGGGGGTAATCACTCGC
TCTTATTATTCTACAAGCTATGGTAATGTTGTGTTTATTTCTCACAATATTAACGGACAAACATATACGACTGTATATGC
TCATTTAAAGAGTCGTCCTGTTTCTGCTGGTCAAAAAGTGAAGCAAGGACAACAAATTGGCATAATGGGGAATACAGGAC
AATCTGAAGGACAGCACTTACATTTTGAAATCCATAAAGGTGAATGGAATGCAAAGAAGAGCAATGCTATGGATCCAAAA
ATATATATTGGTTAA

Upstream 100 bases:

>100_bases
AAATTTAATATGGGAAGTAAAAGAATAATTTTGCTGAATGGTTTAAGTGGGAAAAATATAATGATACTTGAATGTGTTTA
TAGGAAGGTGTTTTGTACTT

Downstream 100 bases:

>100_bases
TTGAAAATTTATCCCGCATTAACGGGCAGTAAGCCCCACGTCTCAAAATTCAGCGAAAGCGAAGAAGTTAGGTTGGTGAT
CAACTGCCCGTAAAAGCCCG

Product: peptidase, M23/M37 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 564

Protein sequence:

>564_residues
MKKILASVAVASVTGSVFISTAQAKNTVIPKDTKHEQTTDVVKYENQVTVNTNALRVRTQPNMSSAIMGRVYEGEVLQVI
GEENSWLKINHKGKTGYVSSEFVSGNNVSAKTNVSMSRSKTVTANVLRVRTQPNTSSAIMGRVYEGKALQVIGEENGWLK
INHNGEVGYVSSQFVIDGSSNGSDNNNGKVQVASGNYKVNVSSLRVRTGPSTSHAILGSIHKGQVVQVTGEIQDWVKINY
SGQTAYISKDYISKSGSNANVDQTNEQQKNVTVQTDGTYIVNATSLRVRTGPATYHSVIGGVLNGRILQVTGVENGWLKI
NHNGRTGYVSSEYVKFVKGGTPSKPETSNLSTGATVGDYYVNVNVLNVRNGAGTNHGVIGALSKGIKVQVLFEQNGWLKI
NYNGKNGYVSSEFLSKTSETDAEKRRQSQEVNKTNDFIQPAAGRYTSRFEKRGGKMHHGLDIAASGTVPVVAAAEGVITR
SYYSTSYGNVVFISHNINGQTYTTVYAHLKSRPVSAGQKVKQGQQIGIMGNTGQSEGQHLHFEIHKGEWNAKKSNAMDPK
IYIG

Sequences:

>Translated_564_residues
MKKILASVAVASVTGSVFISTAQAKNTVIPKDTKHEQTTDVVKYENQVTVNTNALRVRTQPNMSSAIMGRVYEGEVLQVI
GEENSWLKINHKGKTGYVSSEFVSGNNVSAKTNVSMSRSKTVTANVLRVRTQPNTSSAIMGRVYEGKALQVIGEENGWLK
INHNGEVGYVSSQFVIDGSSNGSDNNNGKVQVASGNYKVNVSSLRVRTGPSTSHAILGSIHKGQVVQVTGEIQDWVKINY
SGQTAYISKDYISKSGSNANVDQTNEQQKNVTVQTDGTYIVNATSLRVRTGPATYHSVIGGVLNGRILQVTGVENGWLKI
NHNGRTGYVSSEYVKFVKGGTPSKPETSNLSTGATVGDYYVNVNVLNVRNGAGTNHGVIGALSKGIKVQVLFEQNGWLKI
NYNGKNGYVSSEFLSKTSETDAEKRRQSQEVNKTNDFIQPAAGRYTSRFEKRGGKMHHGLDIAASGTVPVVAAAEGVITR
SYYSTSYGNVVFISHNINGQTYTTVYAHLKSRPVSAGQKVKQGQQIGIMGNTGQSEGQHLHFEIHKGEWNAKKSNAMDPK
IYIG
>Mature_564_residues
MKKILASVAVASVTGSVFISTAQAKNTVIPKDTKHEQTTDVVKYENQVTVNTNALRVRTQPNMSSAIMGRVYEGEVLQVI
GEENSWLKINHKGKTGYVSSEFVSGNNVSAKTNVSMSRSKTVTANVLRVRTQPNTSSAIMGRVYEGKALQVIGEENGWLK
INHNGEVGYVSSQFVIDGSSNGSDNNNGKVQVASGNYKVNVSSLRVRTGPSTSHAILGSIHKGQVVQVTGEIQDWVKINY
SGQTAYISKDYISKSGSNANVDQTNEQQKNVTVQTDGTYIVNATSLRVRTGPATYHSVIGGVLNGRILQVTGVENGWLKI
NHNGRTGYVSSEYVKFVKGGTPSKPETSNLSTGATVGDYYVNVNVLNVRNGAGTNHGVIGALSKGIKVQVLFEQNGWLKI
NYNGKNGYVSSEFLSKTSETDAEKRRQSQEVNKTNDFIQPAAGRYTSRFEKRGGKMHHGLDIAASGTVPVVAAAEGVITR
SYYSTSYGNVVFISHNINGQTYTTVYAHLKSRPVSAGQKVKQGQQIGIMGNTGQSEGQHLHFEIHKGEWNAKKSNAMDPK
IYIG

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=88, Percent_Identity=42.0454545454545, Blast_Score=73, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 60997; Mature: 60997

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILASVAVASVTGSVFISTAQAKNTVIPKDTKHEQTTDVVKYENQVTVNTNALRVRTQ
CHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHEEECCEEEEECCEEEEEEC
PNMSSAIMGRVYEGEVLQVIGEENSWLKINHKGKTGYVSSEFVSGNNVSAKTNVSMSRSK
CCCCHHHHEEEECCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEECCCCCCCC
TVTANVLRVRTQPNTSSAIMGRVYEGKALQVIGEENGWLKINHNGEVGYVSSQFVIDGSS
EEEEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEEEEEEECCC
NGSDNNNGKVQVASGNYKVNVSSLRVRTGPSTSHAILGSIHKGQVVQVTGEIQDWVKINY
CCCCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEEE
SGQTAYISKDYISKSGSNANVDQTNEQQKNVTVQTDGTYIVNATSLRVRTGPATYHSVIG
CCCEEEEEHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEEEEEEECCCHHHHHHH
GVLNGRILQVTGVENGWLKINHNGRTGYVSSEYVKFVKGGTPSKPETSNLSTGATVGDYY
HHHCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
VNVNVLNVRNGAGTNHGVIGALSKGIKVQVLFEQNGWLKINYNGKNGYVSSEFLSKTSET
EEEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCEEEEEECCCCCEECHHHHHCCCCC
DAEKRRQSQEVNKTNDFIQPAAGRYTSRFEKRGGKMHHGLDIAASGTVPVVAAAEGVITR
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEECCEEEEECCCEEEEEECCCEEEE
SYYSTSYGNVVFISHNINGQTYTTVYAHLKSRPVSAGQKVKQGQQIGIMGNTGQSEGQHL
EEECCCCCCEEEEEECCCCCEEEEEEEEHHCCCCCCCHHHHCCCEEEEEECCCCCCCCEE
HFEIHKGEWNAKKSNAMDPKIYIG
EEEEECCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MKKILASVAVASVTGSVFISTAQAKNTVIPKDTKHEQTTDVVKYENQVTVNTNALRVRTQ
CHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHEEECCEEEEECCEEEEEEC
PNMSSAIMGRVYEGEVLQVIGEENSWLKINHKGKTGYVSSEFVSGNNVSAKTNVSMSRSK
CCCCHHHHEEEECCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEECCCCCCCC
TVTANVLRVRTQPNTSSAIMGRVYEGKALQVIGEENGWLKINHNGEVGYVSSQFVIDGSS
EEEEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEEEEEEECCC
NGSDNNNGKVQVASGNYKVNVSSLRVRTGPSTSHAILGSIHKGQVVQVTGEIQDWVKINY
CCCCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEEE
SGQTAYISKDYISKSGSNANVDQTNEQQKNVTVQTDGTYIVNATSLRVRTGPATYHSVIG
CCCEEEEEHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEEEEEEEEEEECCCHHHHHHH
GVLNGRILQVTGVENGWLKINHNGRTGYVSSEYVKFVKGGTPSKPETSNLSTGATVGDYY
HHHCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
VNVNVLNVRNGAGTNHGVIGALSKGIKVQVLFEQNGWLKINYNGKNGYVSSEFLSKTSET
EEEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCEEEEEECCCCCEECHHHHHCCCCC
DAEKRRQSQEVNKTNDFIQPAAGRYTSRFEKRGGKMHHGLDIAASGTVPVVAAAEGVITR
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEECCEEEEECCCEEEEEECCCEEEE
SYYSTSYGNVVFISHNINGQTYTTVYAHLKSRPVSAGQKVKQGQQIGIMGNTGQSEGQHL
EEECCCCCCEEEEEECCCCCEEEEEEEEHHCCCCCCCHHHHCCCEEEEEECCCCCCCCEE
HFEIHKGEWNAKKSNAMDPKIYIG
EEEEECCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]