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The map label for this gene is ypiA [H]

Identifier: 218235224

GI number: 218235224

Start: 1504327

End: 1505589

Strand: Direct

Name: ypiA [H]

Synonym: BCB4264_A1575

Alternate gene names: 218235224

Gene position: 1504327-1505589 (Clockwise)

Preceding gene: 218235825

Following gene: 218233620

Centisome position: 27.76

GC content: 34.52

Gene sequence:

>1263_bases
ATGCAAAAGTTTGAACAAGCTGTTTCATATATTGAAAATGGTGAAGCGGAAAAAGGATTACAATTATTAAAAGAACAATT
AAAAATTGCGAATGATGAAGAGAAGTATGATATCGCTCGTTACTATCATACACTTGGATTTACAGATGAGGCATTAGCAA
TTACTGAAGACTTACGTTTACTGTATCCAGAAGAAAGTGAATTCACTGTATTTTTAGCAGAATTATATATTGATCTAGAT
AAAGAAGATGAAGCGATTGAAGTGCTTCATGATATTCCAGAAAATGACGATTTATATGTTCAATCGTTATTACTTGTTGC
AGATTTATTCCAAATGCAAGGTTTTGATGATGTAGCAGAGCAAAAACTATTAAAGGCGAAAGAAATGATGCCTGATGAAC
CTGTTATTACGTTTGGGTTAGCAGAATTATATAGTAGTAAAGGTGAAGAACAAAAGGCAATTACTTATTATGAATCGCTA
TTAGCGGAACATAAAGTAATGGGTGGTGTTGTGATCGCACTTCGCCTCGCAGAAACGTTAAGCGCGATCGGAAACTGGGA
AGAAGCGATTTCTTATTATGAAGCAGGCCTAGAGGAACAAAAAGATATTCACTCATTATTTGGATATGCCTTCACATTAT
ACCAAGGTGAAGAATATCAGAGAGCAATTGGTGCTTGGCAAGAACTAAAAGAATTAGACCCTGAGTACGCATCACTGTAC
ATGTATTTAGCGAAAAGCTATGAAAAAGAAGGAATGCTTCAAGAAAGCTATGAAACGCTTCATGAAGGAATTAAAGTAGA
TGAGCTTTCAGTTCCATTTTATGTAGAGTTAGCGAACATTGCGGCGAAATTAGGAAAAATAGTAGAAGCAGAGGAAGTTC
TTCAAAAAGCGCTTGAGTTAGATCCAGGGCATTTAGGTGCAACATTAAAATATGCATATATCTTAAAAGAACAAGAAAAG
TACGAAGAGTTAATTGCAATTGTAGAGCGTGCTATTGATAGTGGAGAACCAGATACACAACTACTTTGGGATCTTGCGTA
TGCAAAAAAACAATTAGAAATGTATTCGGATGCATTAAAACACTATGAAAGTGCATATACTTCTTTTAAGAATCATCCAG
ACTTCTTAGAAGAGTACGGTTATTTCTTATTGGAAGAAGGAAAACGAAAAGAGGCGAAAGAAGTATTTACCCAGTTATTA
CAACTAGACCCGACACAAATTCATATTGAAGAGTTGTTATATAATTTAGAGGATTTTTCATAA

Upstream 100 bases:

>100_bases
TAAGAAGAAGCATGCTCATTCTAAAGGTTGCGTTCTAACAGTGAGTTGCTTATGATAAATGAACAGAAGAGAATATTTTT
TAGAATTAAAGGAGACGTTT

Downstream 100 bases:

>100_bases
GTTGGAAGGAAACTGAATGCCGCTTCTTGAATCTAAAAAGAAAAGAGAAAGACAGAGGAGGGACTTAATTGCTATGAATA
CCCCTGTTTCTGTAAACGAG

Product: TPR domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MQKFEQAVSYIENGEAEKGLQLLKEQLKIANDEEKYDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLD
KEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESL
LAEHKVMGGVVIALRLAETLSAIGNWEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDPEYASLY
MYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIVEAEEVLQKALELDPGHLGATLKYAYILKEQEK
YEELIAIVERAIDSGEPDTQLLWDLAYAKKQLEMYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGKRKEAKEVFTQLL
QLDPTQIHIEELLYNLEDFS

Sequences:

>Translated_420_residues
MQKFEQAVSYIENGEAEKGLQLLKEQLKIANDEEKYDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLD
KEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESL
LAEHKVMGGVVIALRLAETLSAIGNWEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDPEYASLY
MYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIVEAEEVLQKALELDPGHLGATLKYAYILKEQEK
YEELIAIVERAIDSGEPDTQLLWDLAYAKKQLEMYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGKRKEAKEVFTQLL
QLDPTQIHIEELLYNLEDFS
>Mature_420_residues
MQKFEQAVSYIENGEAEKGLQLLKEQLKIANDEEKYDIARYYHTLGFTDEALAITEDLRLLYPEESEFTVFLAELYIDLD
KEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAEQKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESL
LAEHKVMGGVVIALRLAETLSAIGNWEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDPEYASLY
MYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIVEAEEVLQKALELDPGHLGATLKYAYILKEQEK
YEELIAIVERAIDSGEPDTQLLWDLAYAKKQLEMYSDALKHYESAYTSFKNHPDFLEEYGYFLLEEGKRKEAKEVFTQLL
QLDPTQIHIEELLYNLEDFS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 9 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307150, Length=311, Percent_Identity=23.7942122186495, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI32307148, Length=311, Percent_Identity=23.7942122186495, Blast_Score=67, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115532690, Length=399, Percent_Identity=24.3107769423559, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI115532692, Length=311, Percent_Identity=24.7588424437299, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 48470; Mature: 48470

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKFEQAVSYIENGEAEKGLQLLKEQLKIANDEEKYDIARYYHTLGFTDEALAITEDLRL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LYPEESEFTVFLAELYIDLDKEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAE
CCCCCCCHHEEHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
QKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKVMGGVVIALRLAETL
HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAIGNWEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDPEYASLY
HHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHH
MYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIVEAEEVLQKALEL
HHHHHHHHHCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DPGHLGATLKYAYILKEQEKYEELIAIVERAIDSGEPDTQLLWDLAYAKKQLEMYSDALK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
HYESAYTSFKNHPDFLEEYGYFLLEEGKRKEAKEVFTQLLQLDPTQIHIEELLYNLEDFS
HHHHHHHHCCCCHHHHHHCCHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQKFEQAVSYIENGEAEKGLQLLKEQLKIANDEEKYDIARYYHTLGFTDEALAITEDLRL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LYPEESEFTVFLAELYIDLDKEDEAIEVLHDIPENDDLYVQSLLLVADLFQMQGFDDVAE
CCCCCCCHHEEHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
QKLLKAKEMMPDEPVITFGLAELYSSKGEEQKAITYYESLLAEHKVMGGVVIALRLAETL
HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAIGNWEEAISYYEAGLEEQKDIHSLFGYAFTLYQGEEYQRAIGAWQELKELDPEYASLY
HHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHH
MYLAKSYEKEGMLQESYETLHEGIKVDELSVPFYVELANIAAKLGKIVEAEEVLQKALEL
HHHHHHHHHCCHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DPGHLGATLKYAYILKEQEKYEELIAIVERAIDSGEPDTQLLWDLAYAKKQLEMYSDALK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
HYESAYTSFKNHPDFLEEYGYFLLEEGKRKEAKEVFTQLLQLDPTQIHIEELLYNLEDFS
HHHHHHHHCCCCHHHHHHCCHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]