Click here to switch to the map view.

The map label for this gene is fni [H]

Identifier: 218235127

GI number: 218235127

Start: 1486635

End: 1487684

Strand: Direct

Name: fni [H]

Synonym: BCB4264_A1554

Alternate gene names: 218235127

Gene position: 1486635-1487684 (Clockwise)

Preceding gene: 218234210

Following gene: 218232939

Centisome position: 27.43

GC content: 38.29

Gene sequence:

>1050_bases
GTGGTAAGGGCAAAACGTAAATTAGATCATATTGAATATGCTCTTTCTACTGGTCAGTCTCGTACGCATGGCTTTCATGA
TATTGATTTTGTGCATCAAAGCTTGCCAAATTCAAATTATGACACAATAACATGTGAAACAAAAATCGGCGAACTTTCAC
TAAGTTCGCCGATTTTTATCAATGCGATGACTGGTGGTGGAGGAGAGAAAACGTTACATATTAATGAGCAATTAGCATAT
GTAGCGAAACATCATAACCTTGCTATGGCTGTAGGTTCGCAAATGGCGGCGTTAAAAGATGAAAGTGAAGCTGCTTCTTA
TAAGGTGATTAGAAAGGTAAACCCAAATGGTATTTTCTTTGCTAATTTAGGTAGTGAGGCAACTATCGAGCAGGCAGAGC
GCGCCGTTGATATGATTGAAGCGAATGCATTACAAATTCATTTAAATGTCATACAAGAGTTAACGATGCCAGAAGGAGAC
CGTGATTTTACTGGAGTACTTCAGCGTATTGAGAAAATTGTTTTAAATAGTAAAGTTCCTATCATTGTAAAAGAAGTTGG
ATTTGGGATGAGTAAGGAAACAATGCAACAGTTAGTGAACGTAGGTGTAACAGCAATTGATATTGGTGGGCAAGGTGGTA
CGAATTTTGCTGCTGTTGAAAACGAAAGAAGGCAGCGAATGCTTTCTTATTTTAATAACTGGGGCATACAAACAGCAACC
TCGATTATTGAAGCAACCTCTACAAATAATAACCTCTCTTTTATTGCATCTGGGGGTATACAAACAGCGCTTGACGTAGC
GAAAGCGATCGCATTAGGGGCGAATACAACTGCGTTTGCTGGTTACTTTTTACGTATTTTAATGCAAGATGGTATTGAGA
AGTTATTGGATGAAATTGAGCTTCTACATACAGATTTGAAATTTATAATGACAGCTCTTGGTGCGAAGACGATAGAAGAG
TTGCAATCTGTACCTCTTGTTGTAAAGGGTGAAACATATCATTGGTTAATGCAGCGTGGTATTGATACTGCGCATTATAG
TAGGAGATAA

Upstream 100 bases:

>100_bases
TTATAGTCAGTATGAGCCAAATGCTGATTCTGCTACTTTCCAATTAAGTGATATTATTGGTGAACAACTGAAAAAATTAA
AGAAATAATGAGGGGTACAA

Downstream 100 bases:

>100_bases
AAAATCAACCGTTCGGTTGATTTTTTTTGTTCTATTCTTTTTCGTAATATAAAGTGGAGAATGGAATTAGCATTATATAA
AAATATCATTTCGTAAAAAT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MVRAKRKLDHIEYALSTGQSRTHGFHDIDFVHQSLPNSNYDTITCETKIGELSLSSPIFINAMTGGGGEKTLHINEQLAY
VAKHHNLAMAVGSQMAALKDESEAASYKVIRKVNPNGIFFANLGSEATIEQAERAVDMIEANALQIHLNVIQELTMPEGD
RDFTGVLQRIEKIVLNSKVPIIVKEVGFGMSKETMQQLVNVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMQDGIEKLLDEIELLHTDLKFIMTALGAKTIEE
LQSVPLVVKGETYHWLMQRGIDTAHYSRR

Sequences:

>Translated_349_residues
MVRAKRKLDHIEYALSTGQSRTHGFHDIDFVHQSLPNSNYDTITCETKIGELSLSSPIFINAMTGGGGEKTLHINEQLAY
VAKHHNLAMAVGSQMAALKDESEAASYKVIRKVNPNGIFFANLGSEATIEQAERAVDMIEANALQIHLNVIQELTMPEGD
RDFTGVLQRIEKIVLNSKVPIIVKEVGFGMSKETMQQLVNVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMQDGIEKLLDEIELLHTDLKFIMTALGAKTIEE
LQSVPLVVKGETYHWLMQRGIDTAHYSRR
>Mature_349_residues
MVRAKRKLDHIEYALSTGQSRTHGFHDIDFVHQSLPNSNYDTITCETKIGELSLSSPIFINAMTGGGGEKTLHINEQLAY
VAKHHNLAMAVGSQMAALKDESEAASYKVIRKVNPNGIFFANLGSEATIEQAERAVDMIEANALQIHLNVIQELTMPEGD
RDFTGVLQRIEKIVLNSKVPIIVKEVGFGMSKETMQQLVNVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMQDGIEKLLDEIELLHTDLKFIMTALGAKTIEE
LQSVPLVVKGETYHWLMQRGIDTAHYSRR

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 38353; Mature: 38353

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRAKRKLDHIEYALSTGQSRTHGFHDIDFVHQSLPNSNYDTITCETKIGELSLSSPIFI
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCEECCCCEEE
NAMTGGGGEKTLHINEQLAYVAKHHNLAMAVGSQMAALKDESEAASYKVIRKVNPNGIFF
EEEECCCCCEEEEECHHHHHHHHHCCHHHHHCCHHHHHCCCHHHHHHHHHEEECCCEEEE
ANLGSEATIEQAERAVDMIEANALQIHLNVIQELTMPEGDRDFTGVLQRIEKIVLNSKVP
EECCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
IIVKEVGFGMSKETMQQLVNVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
EEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMQDGIEKLLDEIE
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLHTDLKFIMTALGAKTIEELQSVPLVVKGETYHWLMQRGIDTAHYSRR
HHHHHHHHHHHHHCHHHHHHHHHCCEEEECCHHHHHHHCCCCCHHCCCC
>Mature Secondary Structure
MVRAKRKLDHIEYALSTGQSRTHGFHDIDFVHQSLPNSNYDTITCETKIGELSLSSPIFI
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCEECCCCEEE
NAMTGGGGEKTLHINEQLAYVAKHHNLAMAVGSQMAALKDESEAASYKVIRKVNPNGIFF
EEEECCCCCEEEEECHHHHHHHHHCCHHHHHCCHHHHHCCCHHHHHHHHHEEECCCEEEE
ANLGSEATIEQAERAVDMIEANALQIHLNVIQELTMPEGDRDFTGVLQRIEKIVLNSKVP
EECCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
IIVKEVGFGMSKETMQQLVNVGVTAIDIGGQGGTNFAAVENERRQRMLSYFNNWGIQTAT
EEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
SIIEATSTNNNLSFIASGGIQTALDVAKAIALGANTTAFAGYFLRILMQDGIEKLLDEIE
HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLHTDLKFIMTALGAKTIEELQSVPLVVKGETYHWLMQRGIDTAHYSRR
HHHHHHHHHHHHHCHHHHHHHHHCCEEEECCHHHHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA