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The map label for this gene is yrkC [H]

Identifier: 218234940

GI number: 218234940

Start: 2519888

End: 2520460

Strand: Reverse

Name: yrkC [H]

Synonym: BCB4264_A2607

Alternate gene names: 218234940

Gene position: 2520460-2519888 (Counterclockwise)

Preceding gene: 218231440

Following gene: 218232808

Centisome position: 46.51

GC content: 34.21

Gene sequence:

>573_bases
ATGCAACATATTCCAGGTTATTATTATCAATCTCAAAGCCCAATGGATAGCATCTGGAATAACAATAATTGGATTTACGC
TTGGAATCCTTATTATTACAGTTACAACAATAATGATTGGAACCACAACCGAAATCCTTATTGTGAAAATGTTAGATTAA
CAGATTATGGAGCTAGACCATTTGTATTGAATATTAACCAAGCCACTAAACAAAACAATACTTACCGCACCGCTATATGG
ACAGGAAAAAACTTACAAGTAACTTTAATGAGTATTAATGTTGGAGATGACATAGGTTTAGAAGTACACCCTACAACTGA
TCAATTCATACGTATTGAAGAGGGCCAAGGACTCGTTCAAATGGGTGATACCAAAGATAAATTAGATTTTCAAGAAATGG
TCTATGATGACCATGCAGTTATGATACCTGCTGGAAAATGGCATAATGTAATTAATATGGGGAATAAAGCACTTAAAATT
TACTCTATATATGCACCTCCAGAACATCCCTATGGTACAGTTCATGAAACAAAAGCGATTGCCATGTCTACTGAAACAAA
TCGGTATTACTAA

Upstream 100 bases:

>100_bases
ATTTTTTATTACTGCCCATTTCCTCTTATTCTGCATTCCTATAAATAGACAACAGCATAGGATAAAAAGTAAATGATAAA
ATTATGAGAGGAGCTTGGAT

Downstream 100 bases:

>100_bases
TGAGAAAATATCTTAATCTTAAACAAAATTATTGCTTAAATACTTCAAAACCATAAAAAATTTAAAATAACTCTTAGTCA
TAGAGCCCCTTAAAAACCAC

Product: cupin domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MQHIPGYYYQSQSPMDSIWNNNNWIYAWNPYYYSYNNNDWNHNRNPYCENVRLTDYGARPFVLNINQATKQNNTYRTAIW
TGKNLQVTLMSINVGDDIGLEVHPTTDQFIRIEEGQGLVQMGDTKDKLDFQEMVYDDHAVMIPAGKWHNVINMGNKALKI
YSIYAPPEHPYGTVHETKAIAMSTETNRYY

Sequences:

>Translated_190_residues
MQHIPGYYYQSQSPMDSIWNNNNWIYAWNPYYYSYNNNDWNHNRNPYCENVRLTDYGARPFVLNINQATKQNNTYRTAIW
TGKNLQVTLMSINVGDDIGLEVHPTTDQFIRIEEGQGLVQMGDTKDKLDFQEMVYDDHAVMIPAGKWHNVINMGNKALKI
YSIYAPPEHPYGTVHETKAIAMSTETNRYY
>Mature_190_residues
MQHIPGYYYQSQSPMDSIWNNNNWIYAWNPYYYSYNNNDWNHNRNPYCENVRLTDYGARPFVLNINQATKQNNTYRTAIW
TGKNLQVTLMSINVGDDIGLEVHPTTDQFIRIEEGQGLVQMGDTKDKLDFQEMVYDDHAVMIPAGKWHNVINMGNKALKI
YSIYAPPEHPYGTVHETKAIAMSTETNRYY

Specific function: Unknown

COG id: COG0662

COG function: function code G; Mannose-6-phosphate isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2 [H]

EC number: NA

Molecular weight: Translated: 22231; Mature: 22231

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHIPGYYYQSQSPMDSIWNNNNWIYAWNPYYYSYNNNDWNHNRNPYCENVRLTDYGARP
CCCCCCCEECCCCCHHHHCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCEEEEECCCCC
FVLNINQATKQNNTYRTAIWTGKNLQVTLMSINVGDDIGLEVHPTTDQFIRIEEGQGLVQ
EEEECCHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEECCCCCEEEEECCCCEEE
MGDTKDKLDFQEMVYDDHAVMIPAGKWHNVINMGNKALKIYSIYAPPEHPYGTVHETKAI
ECCCCCCCCHHHHEECCCEEEEECCCCCCHHHCCCCEEEEEEEECCCCCCCCCCCCCEEE
AMSTETNRYY
EEECCCCCCC
>Mature Secondary Structure
MQHIPGYYYQSQSPMDSIWNNNNWIYAWNPYYYSYNNNDWNHNRNPYCENVRLTDYGARP
CCCCCCCEECCCCCHHHHCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCEEEEECCCCC
FVLNINQATKQNNTYRTAIWTGKNLQVTLMSINVGDDIGLEVHPTTDQFIRIEEGQGLVQ
EEEECCHHHCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEECCCCCEEEEECCCCEEE
MGDTKDKLDFQEMVYDDHAVMIPAGKWHNVINMGNKALKIYSIYAPPEHPYGTVHETKAI
ECCCCCCCCHHHHEECCCEEEEECCCCCCHHHCCCCEEEEEEEECCCCCCCCCCCCCEEE
AMSTETNRYY
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]