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The map label for this gene is nodB [H]

Identifier: 218234898

GI number: 218234898

Start: 3645077

End: 3645739

Strand: Reverse

Name: nodB [H]

Synonym: BCB4264_A3726

Alternate gene names: 218234898

Gene position: 3645739-3645077 (Counterclockwise)

Preceding gene: 218235451

Following gene: 218232367

Centisome position: 67.28

GC content: 35.6

Gene sequence:

>663_bases
GTGGAAAAAGTGGAAGCGAAAATGTTGCTCAGAAAAGAGTTAGAACCAACTGGTTATGTAACATGGGAAGTACCTAATAA
TGAAAAAATTATTGCAATTACATTTGATGATGGACCAGATCCAACGTATACACCACAAGTTTTAGATTTATTACGTCAAT
ATAAGGCTGAAGCGACATTTTTTATGATTGGATTTCGAGTTCAGCGCAATCCATATTTAGTGAAACAAGTGTTAAAAGAG
GGACATGAAATTGGAAATCATACGATGAATCATTTGTATGCGAGTAATTCATCAGATGAAAAATTAGAAAATGATATTTT
AGATGGAAAGAAATTTTTTGAAAAATGGGTGAAAGAACCTTTGTTATTCCGTCCTCCTGGCGGATATATTAACGACGCTG
TATTTAAAACAGCGAAAGAAGCTGGTTATCAAACTGTTCTATGGTCGTGGCATCAAGATCCACGTGATTGGGCAAATCCA
GGGGTTGAATCCATTGTAAATCATGTAGTGAAAAATGCTAAAAGTGGCGATATTGTATTGTTACATGATGGAGGAAATGA
TCGTAGTCAAACGGTAGCGGCACTAGCAAAAATTTTACCTGAACTGAAAAAGCAGGGCTATCGATTTGTAACGGTTTCGG
AATTACTACGTTATAAACATTAG

Upstream 100 bases:

>100_bases
TTGTTTATTCGACAACCTTGCTGCTTTAGTAAACGTTATGCTAAAACAGAAAATTTTTCTATTAGTTTTTTCTTTGCTAT
GTGCAGTACATATATTTCAA

Downstream 100 bases:

>100_bases
AAAAAATCCCAAAAGGAAAATAGACCTTTTGGGATTTTTCTTTACTGGTTCTTTTTACGTTTCTTATTATTTTGTCGCTC
TGCTGGAGTTAAAGGCTCGT

Product: putative polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MEKVEAKMLLRKELEPTGYVTWEVPNNEKIIAITFDDGPDPTYTPQVLDLLRQYKAEATFFMIGFRVQRNPYLVKQVLKE
GHEIGNHTMNHLYASNSSDEKLENDILDGKKFFEKWVKEPLLFRPPGGYINDAVFKTAKEAGYQTVLWSWHQDPRDWANP
GVESIVNHVVKNAKSGDIVLLHDGGNDRSQTVAALAKILPELKKQGYRFVTVSELLRYKH

Sequences:

>Translated_220_residues
MEKVEAKMLLRKELEPTGYVTWEVPNNEKIIAITFDDGPDPTYTPQVLDLLRQYKAEATFFMIGFRVQRNPYLVKQVLKE
GHEIGNHTMNHLYASNSSDEKLENDILDGKKFFEKWVKEPLLFRPPGGYINDAVFKTAKEAGYQTVLWSWHQDPRDWANP
GVESIVNHVVKNAKSGDIVLLHDGGNDRSQTVAALAKILPELKKQGYRFVTVSELLRYKH
>Mature_220_residues
MEKVEAKMLLRKELEPTGYVTWEVPNNEKIIAITFDDGPDPTYTPQVLDLLRQYKAEATFFMIGFRVQRNPYLVKQVLKE
GHEIGNHTMNHLYASNSSDEKLENDILDGKKFFEKWVKEPLLFRPPGGYINDAVFKTAKEAGYQTVLWSWHQDPRDWANP
GVESIVNHVVKNAKSGDIVLLHDGGNDRSQTVAALAKILPELKKQGYRFVTVSELLRYKH

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=167, Percent_Identity=34.1317365269461, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6323338, Length=178, Percent_Identity=29.7752808988764, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 25271; Mature: 25271

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKVEAKMLLRKELEPTGYVTWEVPNNEKIIAITFDDGPDPTYTPQVLDLLRQYKAEATF
CCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEE
FMIGFRVQRNPYLVKQVLKEGHEIGNHTMNHLYASNSSDEKLENDILDGKKFFEKWVKEP
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCC
LLFRPPGGYINDAVFKTAKEAGYQTVLWSWHQDPRDWANPGVESIVNHVVKNAKSGDIVL
EEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHCCCCCCEEE
LHDGGNDRSQTVAALAKILPELKKQGYRFVTVSELLRYKH
EECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCC
>Mature Secondary Structure
MEKVEAKMLLRKELEPTGYVTWEVPNNEKIIAITFDDGPDPTYTPQVLDLLRQYKAEATF
CCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEE
FMIGFRVQRNPYLVKQVLKEGHEIGNHTMNHLYASNSSDEKLENDILDGKKFFEKWVKEP
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCC
LLFRPPGGYINDAVFKTAKEAGYQTVLWSWHQDPRDWANPGVESIVNHVVKNAKSGDIVL
EEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCHHHHHHHHHHCCCCCCEEE
LHDGGNDRSQTVAALAKILPELKKQGYRFVTVSELLRYKH
EECCCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7984092; 9163424 [H]