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The map label for this gene is ywbI [H]

Identifier: 218234836

GI number: 218234836

Start: 3036928

End: 3037806

Strand: Reverse

Name: ywbI [H]

Synonym: BCB4264_A3155

Alternate gene names: 218234836

Gene position: 3037806-3036928 (Counterclockwise)

Preceding gene: 218233275

Following gene: 218233264

Centisome position: 56.06

GC content: 32.08

Gene sequence:

>879_bases
ATGGAATTACGTCATTTAGAGTATTTTATTCAAGTTTGTAATAATAATAGTTTTACTAAAGCTGCGGAAGTTCTAGGTGT
TTCACAGCCGACTTTAAGTCAACAAATCCGTGTGTTAGAAGGTGAACTTGATACACCTTTGTTTCATCGAGTTGGAAGAG
GTATCAAAATGACAGAAGCGGGTAAGCTGCTATTTGATAAAGGAAAATTTATCATGCAACAATTTGATGACGTTTATAAT
GAAATTTTTGAATTAAAGGGTGTAAAAAGAGGTGTAATTACTATAGGAGGTTTATTAGAGGATCTCACTTATTTAACACC
TTATATTATGAAGTTTCAACAACATTATCCCAACATCGTAGTAAAGATTATAGAATCTGAAGTTGCTGTAAATCAAATCG
TTGACAAAAATATTGATTTCGGGATTACACGTAGTGCTCAAATTCCAGACACATTAACAAACACCCTTTTGTATAGTGAA
GAGCTCGTCCTTGTCATTCCAAAAAATCATCCTTTGAATGAAAAATCATTTGTTTCTTTTCGAGAATTAGTAGGGCTGAG
TAGAATAATGGTTTCATGTAGTTGTCGTGAATCTATTAAAATATATTGTGAGAGTTTAGGGTTATCTTTATCTGAAGCAA
ATATAGAAACAAAATCTTCTATTTCTCTATTGAGCCTTGTATACAATGGACATGGGGTTGCCATAATACCTCGTTCACTG
GTTAACTTTGTTAATAATGATACTTTGAGCATAGTTCGTATTACTGATCCAACACCAAGTCAAGGTATTAATCTTATTCA
CTTTGATGATAAATTTTTAAGTTTTGCAGCACGTATCTTTATGCAGAAGTTAAATGATTCTCAAAAAGTATCAGTGTAA

Upstream 100 bases:

>100_bases
ATTTCAATTAGTACAGTAGGGAATAAAGTTGTTATATTAACGTATACATATCGTCCTTTTCATTATAAATCTTTCATAAA
GCGGAGAGTGGGTATCAAGA

Downstream 100 bases:

>100_bases
TAGAAATAATAATGATTTTAGTGTAACAATTGAAAAATTAAGATCTATATTAAAGTCAAAGGGCAGTGGATTTATATGTG
TGGTGTAGTCGATCAAAAGG

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MELRHLEYFIQVCNNNSFTKAAEVLGVSQPTLSQQIRVLEGELDTPLFHRVGRGIKMTEAGKLLFDKGKFIMQQFDDVYN
EIFELKGVKRGVITIGGLLEDLTYLTPYIMKFQQHYPNIVVKIIESEVAVNQIVDKNIDFGITRSAQIPDTLTNTLLYSE
ELVLVIPKNHPLNEKSFVSFRELVGLSRIMVSCSCRESIKIYCESLGLSLSEANIETKSSISLLSLVYNGHGVAIIPRSL
VNFVNNDTLSIVRITDPTPSQGINLIHFDDKFLSFAARIFMQKLNDSQKVSV

Sequences:

>Translated_292_residues
MELRHLEYFIQVCNNNSFTKAAEVLGVSQPTLSQQIRVLEGELDTPLFHRVGRGIKMTEAGKLLFDKGKFIMQQFDDVYN
EIFELKGVKRGVITIGGLLEDLTYLTPYIMKFQQHYPNIVVKIIESEVAVNQIVDKNIDFGITRSAQIPDTLTNTLLYSE
ELVLVIPKNHPLNEKSFVSFRELVGLSRIMVSCSCRESIKIYCESLGLSLSEANIETKSSISLLSLVYNGHGVAIIPRSL
VNFVNNDTLSIVRITDPTPSQGINLIHFDDKFLSFAARIFMQKLNDSQKVSV
>Mature_292_residues
MELRHLEYFIQVCNNNSFTKAAEVLGVSQPTLSQQIRVLEGELDTPLFHRVGRGIKMTEAGKLLFDKGKFIMQQFDDVYN
EIFELKGVKRGVITIGGLLEDLTYLTPYIMKFQQHYPNIVVKIIESEVAVNQIVDKNIDFGITRSAQIPDTLTNTLLYSE
ELVLVIPKNHPLNEKSFVSFRELVGLSRIMVSCSCRESIKIYCESLGLSLSEANIETKSSISLLSLVYNGHGVAIIPRSL
VNFVNNDTLSIVRITDPTPSQGINLIHFDDKFLSFAARIFMQKLNDSQKVSV

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=288, Percent_Identity=29.1666666666667, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI145693105, Length=283, Percent_Identity=27.5618374558304, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787879, Length=253, Percent_Identity=28.8537549407115, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1788297, Length=268, Percent_Identity=27.6119402985075, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1790399, Length=274, Percent_Identity=26.2773722627737, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788887, Length=253, Percent_Identity=29.2490118577075, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1786401, Length=148, Percent_Identity=29.0540540540541, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789204, Length=243, Percent_Identity=26.3374485596708, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI2367136, Length=247, Percent_Identity=26.7206477732794, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788481, Length=286, Percent_Identity=25.8741258741259, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=26.1363636363636, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081904, Length=276, Percent_Identity=25.7246376811594, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787530, Length=192, Percent_Identity=27.6041666666667, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789440, Length=164, Percent_Identity=27.4390243902439, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=22.4913494809689, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790208, Length=269, Percent_Identity=23.7918215613383, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=263, Percent_Identity=25.4752851711027, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=147, Percent_Identity=26.530612244898, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=22.4832214765101, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32908; Mature: 32908

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRHLEYFIQVCNNNSFTKAAEVLGVSQPTLSQQIRVLEGELDTPLFHRVGRGIKMTEA
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEECC
GKLLFDKGKFIMQQFDDVYNEIFELKGVKRGVITIGGLLEDLTYLTPYIMKFQQHYPNIV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VKIIESEVAVNQIVDKNIDFGITRSAQIPDTLTNTLLYSEELVLVIPKNHPLNEKSFVSF
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHEECCCEEEEECCCCCCCHHHHHHH
RELVGLSRIMVSCSCRESIKIYCESLGLSLSEANIETKSSISLLSLVYNGHGVAIIPRSL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHEECCCCEEEEHHHH
VNFVNNDTLSIVRITDPTPSQGINLIHFDDKFLSFAARIFMQKLNDSQKVSV
HHHHCCCCEEEEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MELRHLEYFIQVCNNNSFTKAAEVLGVSQPTLSQQIRVLEGELDTPLFHRVGRGIKMTEA
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEECC
GKLLFDKGKFIMQQFDDVYNEIFELKGVKRGVITIGGLLEDLTYLTPYIMKFQQHYPNIV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VKIIESEVAVNQIVDKNIDFGITRSAQIPDTLTNTLLYSEELVLVIPKNHPLNEKSFVSF
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHEECCCEEEEECCCCCCCHHHHHHH
RELVGLSRIMVSCSCRESIKIYCESLGLSLSEANIETKSSISLLSLVYNGHGVAIIPRSL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHEECCCCEEEEHHHH
VNFVNNDTLSIVRITDPTPSQGINLIHFDDKFLSFAARIFMQKLNDSQKVSV
HHHHCCCCEEEEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]