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The map label for this gene is yubA [H]

Identifier: 218234805

GI number: 218234805

Start: 3233046

End: 3234167

Strand: Reverse

Name: yubA [H]

Synonym: BCB4264_A3355

Alternate gene names: 218234805

Gene position: 3234167-3233046 (Counterclockwise)

Preceding gene: 218234026

Following gene: 218232880

Centisome position: 59.68

GC content: 31.19

Gene sequence:

>1122_bases
TTGGAGAAAATAAATATAAGAAAAAGAGATAAGTTAAGAAAGTTTTTTAGAGAACAAAATTATTTGGCGGTATTACTTGG
ATTTGCGTTATTGTTCATTAATATTTTATTGCTAACAAAAATATCATTTGTTTTTACACCGTTTATCGTATTTTTAAAAA
CAATTTTCTTCCCAGTACTATTAGCAGGCGTGCTATTTTATATTTTACATCCATTCGTTTCGCTTTTAGAAAAGAAAGGT
GTTTCAAGAATCGTATCGATAGCTTCCATCTATTTAATCGTACTAGGATTATTTGTATTTTTAGTTGTAACGGTTATCCC
TATTATTAAAGATCAAATTGATGCATTAATTGATAACTTACCGTATTTTGGCCATGAGATTGAACAAGCAGCACGTAGAT
TCGGGGAAAGTAATTTACTCGGTAAAATTCAAGAGAATTTAAATATTAATGTTGCGAATATGGTAAAAGAATACACAGTT
GATTTTACAAAGTCATTATCATCAGTAACTGGGAATGTAACTGGATTTTTGAGTACTGTTACAGAGGTTGTTTTGACATT
TGTAATGGTTCCATTTATTTTGTTCTATCTTTTAAAAGATGGTGAGCAATTGCCGAATCACTTTTTAAAGTTTATTTCAG
AGCAAAGACAACCAGCAGCAATGAGAATACTAGATGATATGCATTATGCGATTAGCTCGTATATTAGAGGTCAAATTATC
GTCAGCTTATTTATCGGTATTATGCTATTAATTGGTTATCTTATTATTGGTATTAAATATGCGGTATTACTTGCGATTTT
AGCGATGATTGTAAATATCGTTCCGTACGTAGGACCAATTATCGCGATTACACCAGCGCTAATTATCGCATTTATCGACT
CGCCAGCAATGGTGTTAAAAGTAATTATCGTTATGATGGTTGTACAATTAGCAGAAGGTAAATTTATTTCTCCGCAAGTT
ATGGGTAAAAAGTTAGATATTCACCCGATTACTATCATTTTTATCATTTTAACTGCCGGAAACTTATTTGGGATTATGGG
GATTATTTTAGCCATTCCAGGATATGCGATATTAAAAGTGTTAGTTACACACGGTTATAGATTTGTTAAGTTGAATACGT
GA

Upstream 100 bases:

>100_bases
TATTGTATCATTTGTAGTGAAAGCTACAAAGAAATAGATATATAGATTATGATGAAGAGCCCTGAATAAGGGCTTTTCAT
CATTCGAAGAGGTGGTTTCG

Downstream 100 bases:

>100_bases
AAAAAAGCGCTAAAACAGTGGGAACTGTTTTAGCGCTTTTTTATTAACAATTCATTTGCATATTGGCGCGCCCATTGATC
CGCTTCTAATATAGCATCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MEKINIRKRDKLRKFFREQNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKKG
VSRIVSIASIYLIVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRFGESNLLGKIQENLNINVANMVKEYTV
DFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQII
VSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQV
MGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT

Sequences:

>Translated_373_residues
MEKINIRKRDKLRKFFREQNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKKG
VSRIVSIASIYLIVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRFGESNLLGKIQENLNINVANMVKEYTV
DFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQII
VSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQV
MGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT
>Mature_373_residues
MEKINIRKRDKLRKFFREQNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKKG
VSRIVSIASIYLIVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRFGESNLLGKIQENLNINVANMVKEYTV
DFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQII
VSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQV
MGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=327, Percent_Identity=25.9938837920489, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082271, Length=302, Percent_Identity=23.5099337748344, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 41857; Mature: 41857

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKINIRKRDKLRKFFREQNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVL
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGVLFYILHPFVSLLEKKGVSRIVSIASIYLIVLGLFVFLVVTVIPIIKDQIDALIDNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PYFGHEIEQAARRFGESNLLGKIQENLNINVANMVKEYTVDFTKSLSSVTGNVTGFLSTV
CCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQII
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPAMVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKV
HHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LVTHGYRFVKLNT
HHHCCCEEEEECC
>Mature Secondary Structure
MEKINIRKRDKLRKFFREQNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVL
CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGVLFYILHPFVSLLEKKGVSRIVSIASIYLIVLGLFVFLVVTVIPIIKDQIDALIDNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PYFGHEIEQAARRFGESNLLGKIQENLNINVANMVKEYTVDFTKSLSSVTGNVTGFLSTV
CCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQII
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPAMVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
VIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKV
HHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LVTHGYRFVKLNT
HHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]