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The map label for this gene is yabO [H]

Identifier: 218234755

GI number: 218234755

Start: 61932

End: 62207

Strand: Direct

Name: yabO [H]

Synonym: BCB4264_A0062

Alternate gene names: 218234755

Gene position: 61932-62207 (Clockwise)

Preceding gene: 218235337

Following gene: 218233808

Centisome position: 1.14

GC content: 31.16

Gene sequence:

>276_bases
ATGCGTCTAGATAAGTTTTTAAAAGTATCACGTTTAATTAAAAGAAGAACATTAGCGAAAGAAGTAGCTGATCAAGGAAG
AATATCTATTAATGGTCAAGTGGCAAAAGCGAGTTCTGATGTGAAAGTAGCTGATGAATTAACAATTCGTTTTGGTCAAA
AAATAGTGACTGTGAAAATAAATGAATTAAAAGAAACAACTAAAAAAGAAGATGCAGCAAATATGTATAGCTTAGTTCGT
GAAGAAAAAGTAAAAGCGGAAGAAGGCTTGTTCTAA

Upstream 100 bases:

>100_bases
TAGCTGAAATGAATAAAGAGATGAAAGATTTATCATTAGAACAGTTAGATGTTTTATGGGAAGAAGCGAAACAAACAGAG
CGTTAATAGGGGGATTTGAT

Downstream 100 bases:

>100_bases
AATCATTTATCCCCTCATACATTACTATTAGCTAGTAAAAACCTATGGGGGGATTTACGTGAATAATGGTTACTCACCTA
CGTCTTCTAATCAACAAAAT

Product: S4 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKIVTVKINELKETTKKEDAANMYSLVR
EEKVKAEEGLF

Sequences:

>Translated_91_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKIVTVKINELKETTKKEDAANMYSLVR
EEKVKAEEGLF
>Mature_91_residues
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKIVTVKINELKETTKKEDAANMYSLVR
EEKVKAEEGLF

Specific function: Involved In The Recycling Of Free 50s Ribosomal Subunits That Still Carry A Nascent Chain. Binds RNA More Specifically Than DNA. Binds With Very High Affinity To The Free 50s Ribosomal Subunit. Does Not Bind It When It Is Part Of The 70s Ribosome. [C]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 10323; Mature: 10323

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKIVTVKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCHHHHHHHHHCCCEEEEEEH
NELKETTKKEDAANMYSLVREEKVKAEEGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRLDKFLKVSRLIKRRTLAKEVADQGRISINGQVAKASSDVKVADELTIRFGQKIVTVKI
CCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCHHHHHHHHHCCCEEEEEEH
NELKETTKKEDAANMYSLVREEKVKAEEGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]