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The map label for this gene is yocH [H]

Identifier: 218234701

GI number: 218234701

Start: 995295

End: 996560

Strand: Direct

Name: yocH [H]

Synonym: BCB4264_A1015

Alternate gene names: 218234701

Gene position: 995295-996560 (Clockwise)

Preceding gene: 218232787

Following gene: 218234140

Centisome position: 18.37

GC content: 37.6

Gene sequence:

>1266_bases
ATGTTTAAAAAAGGCGTATCATTGCTATTAATTTTCATTTTATCTATTTCTACATTTAGTATAGTAACTCAGGCTGCTAG
TAGTTCAGAATATGTGAATCAATCATTCTATGGGTATAAGGAGCCATCTTTTAATTCAGTTAAAACAAATGGCGGATCAG
AGTATGGTGCTCAAAATGTAGGAGTCGTGGAAAAAAGAGATAATGGTTGGTGGAAGATTGAAACATGGGAAGGTCCAGTT
TGGATTAACTTAAATGGGGAAGAACGTGTCATGGGAGATTTCTATGCATATGATGAACCTTCTTTCTCATCAAAGGTTGC
GAATGCTGGAGCGAAGTACGGGCGACAAACATTTAGAATAGTAGATGGAACAACAGATGGTTGGCTAAAATTTAAGACGT
GGGAAGGCGACAAGTGGATGAATCCTACGGCTGAACAAATTACTGTCAACAAAACAATCTATGCGTATAATGAACCTTCA
TTTAATGCACAGAAAGCAAATTATGAAGCACCATTTAACCCGCAAAATTGGGGAGTAGTAGAAAAAAAAGAAAATGGCTG
GATGAAAGTAAGTACTTATGAAGGTTATAAGTGGATCAATCCAGATGGAGAAGAAAGGTTCATAAACAAATCATTCTATG
CGTATAACGAAGCTTCATTTAATGCAGCTAAAGCAAACGCTGGAGCATTATATAGTCCACAAAATTTTAGAGTTGTGGAT
GGAACACCTAGTGGATGGTTGAAGGTTAAAACATGGGAAGGCGAGAAATGGCTGAATCTAGATGGAGAAGAAAGATTCAT
AAACAAATCATTCTATGCGTATAACGAGCCTTCATTTAGCTCAGGCAAAGCAAACGCTGGAGCATTATATAGTCCGCAGA
ATTTTAGAGTTGTAGATGGGACAACTAGTGGTTGGTTGAAGATTAAAACATGGGAAGGCGACAAGTGGATGAATTTAAAT
GCGGAAGATACAGGCGTAGAATTCTACGTGGAAGCTACTGCATATAGTGTAGAAGGTAGTCCACCAAATGAAAGGATTAC
GGCGTCTGGAATAGACATAGGAAAAAATCCTAACATCAAGTTAATTGCAGTTGATCCTAAAGTTATTAAACTAGGAACGA
AAGTTTGGGTTGAAGGATACGGTGATGCAATTGCTGGAGATACAGGTGGGGCTATTAAAGGCAATAAAATTGATGTTCTG
TTTCCTACAGAAAAGCAAGCACGTGAATGGGGACGTAAAAAAGTGAGAATTAAAATAATGAAATAG

Upstream 100 bases:

>100_bases
TTTACCAATTAATATGGTAAATTATAGATAAATAAAGAAATTTATGTTAATGTACTTATGGTAATATACTGTTAAAAAAA
GGAAGAGGTGAAAAGTTTAT

Downstream 100 bases:

>100_bases
GATATATCTATTCTTTGCTTCGAAAATTATATATTAGACAAAATAAAAGGGAGGATATTTTTATGTTTAAGAAAAGTATA
GGAATCTTATTGTTTTTTAT

Product: fibronectin type III domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MFKKGVSLLLIFILSISTFSIVTQAASSSEYVNQSFYGYKEPSFNSVKTNGGSEYGAQNVGVVEKRDNGWWKIETWEGPV
WINLNGEERVMGDFYAYDEPSFSSKVANAGAKYGRQTFRIVDGTTDGWLKFKTWEGDKWMNPTAEQITVNKTIYAYNEPS
FNAQKANYEAPFNPQNWGVVEKKENGWMKVSTYEGYKWINPDGEERFINKSFYAYNEASFNAAKANAGALYSPQNFRVVD
GTPSGWLKVKTWEGEKWLNLDGEERFINKSFYAYNEPSFSSGKANAGALYSPQNFRVVDGTTSGWLKIKTWEGDKWMNLN
AEDTGVEFYVEATAYSVEGSPPNERITASGIDIGKNPNIKLIAVDPKVIKLGTKVWVEGYGDAIAGDTGGAIKGNKIDVL
FPTEKQAREWGRKKVRIKIMK

Sequences:

>Translated_421_residues
MFKKGVSLLLIFILSISTFSIVTQAASSSEYVNQSFYGYKEPSFNSVKTNGGSEYGAQNVGVVEKRDNGWWKIETWEGPV
WINLNGEERVMGDFYAYDEPSFSSKVANAGAKYGRQTFRIVDGTTDGWLKFKTWEGDKWMNPTAEQITVNKTIYAYNEPS
FNAQKANYEAPFNPQNWGVVEKKENGWMKVSTYEGYKWINPDGEERFINKSFYAYNEASFNAAKANAGALYSPQNFRVVD
GTPSGWLKVKTWEGEKWLNLDGEERFINKSFYAYNEPSFSSGKANAGALYSPQNFRVVDGTTSGWLKIKTWEGDKWMNLN
AEDTGVEFYVEATAYSVEGSPPNERITASGIDIGKNPNIKLIAVDPKVIKLGTKVWVEGYGDAIAGDTGGAIKGNKIDVL
FPTEKQAREWGRKKVRIKIMK
>Mature_421_residues
MFKKGVSLLLIFILSISTFSIVTQAASSSEYVNQSFYGYKEPSFNSVKTNGGSEYGAQNVGVVEKRDNGWWKIETWEGPV
WINLNGEERVMGDFYAYDEPSFSSKVANAGAKYGRQTFRIVDGTTDGWLKFKTWEGDKWMNPTAEQITVNKTIYAYNEPS
FNAQKANYEAPFNPQNWGVVEKKENGWMKVSTYEGYKWINPDGEERFINKSFYAYNEASFNAAKANAGALYSPQNFRVVD
GTPSGWLKVKTWEGEKWLNLDGEERFINKSFYAYNEPSFSSGKANAGALYSPQNFRVVDGTTSGWLKIKTWEGDKWMNLN
AEDTGVEFYVEATAYSVEGSPPNERITASGIDIGKNPNIKLIAVDPKVIKLGTKVWVEGYGDAIAGDTGGAIKGNKIDVL
FPTEKQAREWGRKKVRIKIMK

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 47328; Mature: 47328

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKGVSLLLIFILSISTFSIVTQAASSSEYVNQSFYGYKEPSFNSVKTNGGSEYGAQNV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCCC
GVVEKRDNGWWKIETWEGPVWINLNGEERVMGDFYAYDEPSFSSKVANAGAKYGRQTFRI
CEEEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEE
VDGTTDGWLKFKTWEGDKWMNPTAEQITVNKTIYAYNEPSFNAQKANYEAPFNPQNWGVV
EECCCCCEEEEEEECCCCCCCCCHHEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEE
EKKENGWMKVSTYEGYKWINPDGEERFINKSFYAYNEASFNAAKANAGALYSPQNFRVVD
EECCCCCEEEEEECCEEEECCCCHHHEECCEEEEECCCCCCCCCCCCCEEECCCCCEEEE
GTPSGWLKVKTWEGEKWLNLDGEERFINKSFYAYNEPSFSSGKANAGALYSPQNFRVVDG
CCCCCCEEEEEECCCEEECCCCHHHEECCCEEEECCCCCCCCCCCCCEEECCCCCEEEEC
TTSGWLKIKTWEGDKWMNLNAEDTGVEFYVEATAYSVEGSPPNERITASGIDIGKNPNIK
CCCCEEEEEEECCCEEEECCCCCCCEEEEEEEEEEEECCCCCCCEEEECCCCCCCCCCEE
LIAVDPKVIKLGTKVWVEGYGDAIAGDTGGAIKGNKIDVLFPTEKQAREWGRKKVRIKIM
EEEECCEEEEECEEEEEEECCCEECCCCCCCEECCEEEEEECCHHHHHHCCCEEEEEEEE
K
C
>Mature Secondary Structure
MFKKGVSLLLIFILSISTFSIVTQAASSSEYVNQSFYGYKEPSFNSVKTNGGSEYGAQNV
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCCCC
GVVEKRDNGWWKIETWEGPVWINLNGEERVMGDFYAYDEPSFSSKVANAGAKYGRQTFRI
CEEEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEE
VDGTTDGWLKFKTWEGDKWMNPTAEQITVNKTIYAYNEPSFNAQKANYEAPFNPQNWGVV
EECCCCCEEEEEEECCCCCCCCCHHEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEE
EKKENGWMKVSTYEGYKWINPDGEERFINKSFYAYNEASFNAAKANAGALYSPQNFRVVD
EECCCCCEEEEEECCEEEECCCCHHHEECCEEEEECCCCCCCCCCCCCEEECCCCCEEEE
GTPSGWLKVKTWEGEKWLNLDGEERFINKSFYAYNEPSFSSGKANAGALYSPQNFRVVDG
CCCCCCEEEEEECCCEEECCCCHHHEECCCEEEECCCCCCCCCCCCCEEECCCCCEEEEC
TTSGWLKIKTWEGDKWMNLNAEDTGVEFYVEATAYSVEGSPPNERITASGIDIGKNPNIK
CCCCEEEEEEECCCEEEECCCCCCCEEEEEEEEEEEECCCCCCCEEEECCCCCCCCCCEE
LIAVDPKVIKLGTKVWVEGYGDAIAGDTGGAIKGNKIDVLFPTEKQAREWGRKKVRIKIM
EEEECCEEEEECEEEEEEECCCEECCCCCCCEECCEEEEEECCHHHHHHCCCEEEEEEEE
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]