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The map label for this gene is ybbR [H]

Identifier: 218234464

GI number: 218234464

Start: 160341

End: 161822

Strand: Direct

Name: ybbR [H]

Synonym: BCB4264_A0188

Alternate gene names: 218234464

Gene position: 160341-161822 (Clockwise)

Preceding gene: 218234742

Following gene: 218233725

Centisome position: 2.96

GC content: 36.03

Gene sequence:

>1482_bases
ATGGATAAGTTAATGGAGAATCATTGGTTTTTAAAAGGGATCTCATTACTATTGGCGTGTATGCTTTTTATGTCAGCGAC
GTTAACTGAAAAAAATACGACATCAGGTATATTACCTTTTGCAAATGATACGAAAGAAACATTAACTAATTATGCTATTA
ATCTTAAGTATGATGAGGAAAAATATATTGTAAGTGGTATTCCGGCAGAGGGCGTTAAAGTAAAATTAGAAGGCCCAAAA
GCATCAGTTGCTACAGCAAAAGCAAAAAAACAATTTGACATACCGGTTGATTTGCGAGATAGTCCAAAAGGAACTTATGA
GATTTCTTTAAAAACGAACGGGCTTCCAGATGATGTGAAAGGAACAGTTCAGCCATCAACAATTAAAGTTACTCTTCATG
AAAAGGCGAGAAAATATGTTCATGTAGATCTGAAATTATCAAATGAGGACCAGATGCCAGCGGGGGCTACTCTAGAAAAA
TCAAGCCTTAAACCGGATACTGTTGAGGTAGTTGGGACGAAAGAAGAAATTGAAAGCATTTCATCTGCCAAAGCGTATGT
TGATTTAAAAGGTGTTAATAAAACTGTTACAAAAACTACCGAAGTTACATTATACAACAAAGAAGGAAAACGTTTAAATG
TAAGAACAAGTCCATCTAAGATTAGTGTAACGTTGAATGTGGCAACGCAAACTACAGCCAATAATACTGAAAAAACTGTT
CCTGTAACGTATACGAAGAAGGGGAGTTTAGCAGAAGGATTGGCGGTTACAAATATCAGTGTTGAACCGAGAGAAGTAAC
GATAGCTGGTCCAAAAGATATTTTGGATAATATACAATCTCTAGAGGGGGTCGAAGTAGATCTTAGTCAATTGACAGAGT
CTACAACATTCGATGCCTCTGTTTTATTACCCAAGGGTGTAACAAGTGCAAAACCGAATCAAGTGAAGGTTTCGGTGGGG
GTGCAAAAAACAAAACAAACGAAAACAAAAACGATTGATGGTATCCCAATCCAGAAAAATGGACTGTCTAAAGATGTTAC
TGCTCAGCTACTTTCGCCGCAAGATGGAAAGATAAGTGTTGATATTTCAGGAGAAGCAAGTATAGTAGATAAAATAACAG
CTGCTCAAATAACAGCGGTAATTAACCTGCAAAATGTATCCTCAGGGACGAAAGATATTTCCATTCAAGTGAGCGGTCCT
GGTAATATTTCAATAGAGCCAAAACAAAAAAGTGCTAAAGTTACTATTGTGAAGAAAGAAAAACCAGATAAAGAAGTACA
GGGTAACGGTCAACAACCCGATTCAAATACGGATCAAGAAAATCAAAATGAGAAACCAAAAAATCCTGAACCTGATTCAG
AAAAAGAACAGGAAAAGAATCAAAACCAAAATCAAAATCAAGATAAAGATAAAGAAACGAGTCAAGAACCAACAGTAGAT
AATCAAAAAGAGCAAGAAAAAGGAGCGAATCATAATGGGTAA

Upstream 100 bases:

>100_bases
GATTTGAAGACAGAACAGCTGAAAGATATGTTATTAGCTGAATTTAGTGGAAACGAAAAAACGACTTCTTCGTCTTTATG
GAATTGGAGGAGAAAGCGTC

Downstream 100 bases:

>100_bases
ATATTTTGGTACAGATGGAGTACGCGGAGTTGCAAATAAGGAGTTAACACCTGAATTAGCTTTCAAAATTGGACGTTTTG
GTGGTTATGTATTAACAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MDKLMENHWFLKGISLLLACMLFMSATLTEKNTTSGILPFANDTKETLTNYAINLKYDEEKYIVSGIPAEGVKVKLEGPK
ASVATAKAKKQFDIPVDLRDSPKGTYEISLKTNGLPDDVKGTVQPSTIKVTLHEKARKYVHVDLKLSNEDQMPAGATLEK
SSLKPDTVEVVGTKEEIESISSAKAYVDLKGVNKTVTKTTEVTLYNKEGKRLNVRTSPSKISVTLNVATQTTANNTEKTV
PVTYTKKGSLAEGLAVTNISVEPREVTIAGPKDILDNIQSLEGVEVDLSQLTESTTFDASVLLPKGVTSAKPNQVKVSVG
VQKTKQTKTKTIDGIPIQKNGLSKDVTAQLLSPQDGKISVDISGEASIVDKITAAQITAVINLQNVSSGTKDISIQVSGP
GNISIEPKQKSAKVTIVKKEKPDKEVQGNGQQPDSNTDQENQNEKPKNPEPDSEKEQEKNQNQNQNQDKDKETSQEPTVD
NQKEQEKGANHNG

Sequences:

>Translated_493_residues
MDKLMENHWFLKGISLLLACMLFMSATLTEKNTTSGILPFANDTKETLTNYAINLKYDEEKYIVSGIPAEGVKVKLEGPK
ASVATAKAKKQFDIPVDLRDSPKGTYEISLKTNGLPDDVKGTVQPSTIKVTLHEKARKYVHVDLKLSNEDQMPAGATLEK
SSLKPDTVEVVGTKEEIESISSAKAYVDLKGVNKTVTKTTEVTLYNKEGKRLNVRTSPSKISVTLNVATQTTANNTEKTV
PVTYTKKGSLAEGLAVTNISVEPREVTIAGPKDILDNIQSLEGVEVDLSQLTESTTFDASVLLPKGVTSAKPNQVKVSVG
VQKTKQTKTKTIDGIPIQKNGLSKDVTAQLLSPQDGKISVDISGEASIVDKITAAQITAVINLQNVSSGTKDISIQVSGP
GNISIEPKQKSAKVTIVKKEKPDKEVQGNGQQPDSNTDQENQNEKPKNPEPDSEKEQEKNQNQNQNQDKDKETSQEPTVD
NQKEQEKGANHNG
>Mature_493_residues
MDKLMENHWFLKGISLLLACMLFMSATLTEKNTTSGILPFANDTKETLTNYAINLKYDEEKYIVSGIPAEGVKVKLEGPK
ASVATAKAKKQFDIPVDLRDSPKGTYEISLKTNGLPDDVKGTVQPSTIKVTLHEKARKYVHVDLKLSNEDQMPAGATLEK
SSLKPDTVEVVGTKEEIESISSAKAYVDLKGVNKTVTKTTEVTLYNKEGKRLNVRTSPSKISVTLNVATQTTANNTEKTV
PVTYTKKGSLAEGLAVTNISVEPREVTIAGPKDILDNIQSLEGVEVDLSQLTESTTFDASVLLPKGVTSAKPNQVKVSVG
VQKTKQTKTKTIDGIPIQKNGLSKDVTAQLLSPQDGKISVDISGEASIVDKITAAQITAVINLQNVSSGTKDISIQVSGP
GNISIEPKQKSAKVTIVKKEKPDKEVQGNGQQPDSNTDQENQNEKPKNPEPDSEKEQEKNQNQNQNQDKDKETSQEPTVD
NQKEQEKGANHNG

Specific function: Unknown

COG id: COG4856

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 YbbR-like domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012505 [H]

Pfam domain/function: PF07949 YbbR [H]

EC number: NA

Molecular weight: Translated: 53463; Mature: 53463

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLMENHWFLKGISLLLACMLFMSATLTEKNTTSGILPFANDTKETLTNYAINLKYDEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHCEEEEEEECCC
KYIVSGIPAEGVKVKLEGPKASVATAKAKKQFDIPVDLRDSPKGTYEISLKTNGLPDDVK
EEEEECCCCCCEEEEECCCCCCEEHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
GTVQPSTIKVTLHEKARKYVHVDLKLSNEDQMPAGATLEKSSLKPDTVEVVGTKEEIESI
CCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEECHHHHHHH
SSAKAYVDLKGVNKTVTKTTEVTLYNKEGKRLNVRTSPSKISVTLNVATQTTANNTEKTV
HCCEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEECCCEEEEEEEEEEEECCCCCCCEE
PVTYTKKGSLAEGLAVTNISVEPREVTIAGPKDILDNIQSLEGVEVDLSQLTESTTFDAS
EEEEECCCCCCCCEEEEEEECCCCEEEEECHHHHHHHHHHCCCCEEEHHHHCCCCCCCEE
VLLPKGVTSAKPNQVKVSVGVQKTKQTKTKTIDGIPIQKNGLSKDVTAQLLSPQDGKISV
EEECCCCCCCCCCEEEEEECCCHHHCCHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEE
DISGEASIVDKITAAQITAVINLQNVSSGTKDISIQVSGPGNISIEPKQKSAKVTIVKKE
EECCCCHHHHHHHHEEEEEEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCEEEEEECC
KPDKEVQGNGQQPDSNTDQENQNEKPKNPEPDSEKEQEKNQNQNQNQDKDKETSQEPTVD
CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHCCCCCCCC
NQKEQEKGANHNG
CCHHHHCCCCCCC
>Mature Secondary Structure
MDKLMENHWFLKGISLLLACMLFMSATLTEKNTTSGILPFANDTKETLTNYAINLKYDEE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHCEEEEEEECCC
KYIVSGIPAEGVKVKLEGPKASVATAKAKKQFDIPVDLRDSPKGTYEISLKTNGLPDDVK
EEEEECCCCCCEEEEECCCCCCEEHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
GTVQPSTIKVTLHEKARKYVHVDLKLSNEDQMPAGATLEKSSLKPDTVEVVGTKEEIESI
CCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEECHHHHHHH
SSAKAYVDLKGVNKTVTKTTEVTLYNKEGKRLNVRTSPSKISVTLNVATQTTANNTEKTV
HCCEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEECCCEEEEEEEEEEEECCCCCCCEE
PVTYTKKGSLAEGLAVTNISVEPREVTIAGPKDILDNIQSLEGVEVDLSQLTESTTFDAS
EEEEECCCCCCCCEEEEEEECCCCEEEEECHHHHHHHHHHCCCCEEEHHHHCCCCCCCEE
VLLPKGVTSAKPNQVKVSVGVQKTKQTKTKTIDGIPIQKNGLSKDVTAQLLSPQDGKISV
EEECCCCCCCCCCEEEEEECCCHHHCCHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEE
DISGEASIVDKITAAQITAVINLQNVSSGTKDISIQVSGPGNISIEPKQKSAKVTIVKKE
EECCCCHHHHHHHHEEEEEEEEEECCCCCCCEEEEEECCCCCEEECCCCCCCEEEEEECC
KPDKEVQGNGQQPDSNTDQENQNEKPKNPEPDSEKEQEKNQNQNQNQDKDKETSQEPTVD
CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHCCCCCCCC
NQKEQEKGANHNG
CCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]