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The map label for this gene is 218234396

Identifier: 218234396

GI number: 218234396

Start: 2694786

End: 2695472

Strand: Reverse

Name: 218234396

Synonym: BCB4264_A2799

Alternate gene names: NA

Gene position: 2695472-2694786 (Counterclockwise)

Preceding gene: 218233607

Following gene: 218233818

Centisome position: 49.74

GC content: 32.46

Gene sequence:

>687_bases
TTGTGCACAAAAGTAACTCATGTTTTAAAGAACCATATCGATATGAATCATTCAAATATAAACTTTTTAATTGAACAATA
TGGAGAGTTAAAAAGATACTGTACTTTTTTAACGAAAAACAAATGGGATGGGGAAGATCTCGCCCAAGAAACAGTGTGTA
AAGTGCTTCAAAAATATAGAAATAAAGATATTTGTATGACACTCGTCTATAAAATAGCAAGAAATCGTTGGTTAGATCAG
ATGAAGTCTAAGTCTGTTCATGAAAAAATAAGAGAACAAATCACTTTTGAAGAACCACATGAGAACATTGCAGATTTGCA
TGAAATGGTAGGGAAAGTATTGTCTTCATTAAATGTACAGCAATCCGCAATTTTATTATTAAAAGATGTTTTTCAATATA
GTATCGCTGATATTGCTAAAGTGTGTTCTGTATCAGAAGGTGCCGTAAAGGCTTCTTTATTTCGAAGTAGAAATAGGCTG
AAAACTGTAAGTGAAGAAGGGATTGAGATAGTCGAATTCACAGAGGATATTGAAGTTGTTGTAACATCTATTCGTGAGGA
AAGACCAGAATTGTTAACGAAACTTCTTCCGACAATAGATTTTACTAAGTTACCATCTAAACAGCCAGTGTTATTATTTA
ATGTGAAAAACCCTTCTTCCTACAGTTGTATGCTTTGCGTAGCATAA

Upstream 100 bases:

>100_bases
ACCGCGAATTATTGAACATAAACATTATTTTTTTATATCCCCGTAACTTTTTTAAATGTTGAATCGTTTATTAAGTAAGC
GCTGAAAAGGAGTGGTTATT

Downstream 100 bases:

>100_bases
CAAGTATTGGAGGAATTTAAAATGAATACAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATAT
ATATTCAAGGTTATTAAAAG

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Factor Sigma-; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; DNA-Directed RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Ecf-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MCTKVTHVLKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYRNKDICMTLVYKIARNRWLDQ
MKSKSVHEKIREQITFEEPHENIADLHEMVGKVLSSLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRL
KTVSEEGIEIVEFTEDIEVVVTSIREERPELLTKLLPTIDFTKLPSKQPVLLFNVKNPSSYSCMLCVA

Sequences:

>Translated_228_residues
MCTKVTHVLKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYRNKDICMTLVYKIARNRWLDQ
MKSKSVHEKIREQITFEEPHENIADLHEMVGKVLSSLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRL
KTVSEEGIEIVEFTEDIEVVVTSIREERPELLTKLLPTIDFTKLPSKQPVLLFNVKNPSSYSCMLCVA
>Mature_228_residues
MCTKVTHVLKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYRNKDICMTLVYKIARNRWLDQ
MKSKSVHEKIREQITFEEPHENIADLHEMVGKVLSSLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRL
KTVSEEGIEIVEFTEDIEVVVTSIREERPELLTKLLPTIDFTKLPSKQPVLLFNVKNPSSYSCMLCVA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26299; Mature: 26299

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTKVTHVLKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYR
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
NKDICMTLVYKIARNRWLDQMKSKSVHEKIREQITFEEPHENIADLHEMVGKVLSSLNVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHH
QSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEEGIEIVEFTEDIEVV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VTSIREERPELLTKLLPTIDFTKLPSKQPVLLFNVKNPSSYSCMLCVA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC
>Mature Secondary Structure
MCTKVTHVLKNHIDMNHSNINFLIEQYGELKRYCTFLTKNKWDGEDLAQETVCKVLQKYR
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
NKDICMTLVYKIARNRWLDQMKSKSVHEKIREQITFEEPHENIADLHEMVGKVLSSLNVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHH
QSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEEGIEIVEFTEDIEVV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VTSIREERPELLTKLLPTIDFTKLPSKQPVLLFNVKNPSSYSCMLCVA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA