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The map label for this gene is dapA1 [H]

Identifier: 218234377

GI number: 218234377

Start: 2731419

End: 2732315

Strand: Reverse

Name: dapA1 [H]

Synonym: BCB4264_A2844

Alternate gene names: 218234377

Gene position: 2732315-2731419 (Counterclockwise)

Preceding gene: 218233634

Following gene: 218235819

Centisome position: 50.42

GC content: 36.23

Gene sequence:

>897_bases
ATGCAAAAAATTAAAGGGGCATTTCCAGTATTAATAACACCGATGGATGAATTTCAGGAAATTAATTGGGATGGGGTAAA
ACAAAATGTAAATTACTTTATCGAACAAAAGGTTGCAGGTGTCATCATTAATGGAAGTACAGGAGAGTTTGTAAGTTTAT
CAAAAGAAGAACGATTTAAAATGGTAGAAACCGTGTTGAAAGAAATTGATGGCCGTATTCCAGTCATTGTTGGAACTGCA
GCAGAGACGACGAAAGAAACAATTGAATATACGAAACATGCAGAAGCGCACGGAGCGGATTGTGCATTAATTATAAACTC
TTACTATTGTAAACCGAAGGAAGAGGAGATTTATTTTCATTTTAAAGAAATCTCAAATTCTGTAAATATACCAATTATGC
TATACAATAACCCATTTACTTCTGGTGTTGATATGAGTACAAAGCTAATGCTCCGTATTGGAAAAGAGTGTGAAAATGTT
ACACATATTAAAGAATCTAGCGGAGATATTCGAAAAGCGAGAGATTTAGTAAGACAAAGTGAAGGGGCTTTCCAAGTCTT
CTGTGGTTCTGAAGATTTAGTTATGGAATCATATTTAGTTGGTGCTTCGGGATGGGTTTCAGTAGCAGGGAATATCGTTC
CCGGTCTCGTTACAAAAATGTATGAGCATTTTCAAAATGGTGAATTAGAAAAGGCGTGGGAAATAAACGATGCTATTTTA
CCACTTTGCGAGTTTCTTGAAGGATCAGGGAAATATGTTCAAATCGTTAAACGTTCCATGGAATTACATGGGCAAGCGGG
AGGACCTTCTCGCTATCCAAGACTAGGATTAACTGTTGACGAAGATCAAAAGCTTCAAACGATTTTATCAAATATTGCAG
CTCATGTAGCTGTTTAA

Upstream 100 bases:

>100_bases
AGAGGATTTATTACAGGAATGCAGACGTTTCTATTAGACCCTACGGATCCATTTCCGGCAGGTTTCTTATTAAAATAAAA
TGTGATAAGGAGAGATAAAT

Downstream 100 bases:

>100_bases
ATAAGGAGGGGAACATAATGTTAAAGACAAATATTGAGCTGAAACCAAAAGTGGAAGCGTTTTTAAATGAAGAAATTAAA
ATGTTTATTAATGGCGAATT

Product: dihydrodipicolinate synthase

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MQKIKGAFPVLITPMDEFQEINWDGVKQNVNYFIEQKVAGVIINGSTGEFVSLSKEERFKMVETVLKEIDGRIPVIVGTA
AETTKETIEYTKHAEAHGADCALIINSYYCKPKEEEIYFHFKEISNSVNIPIMLYNNPFTSGVDMSTKLMLRIGKECENV
THIKESSGDIRKARDLVRQSEGAFQVFCGSEDLVMESYLVGASGWVSVAGNIVPGLVTKMYEHFQNGELEKAWEINDAIL
PLCEFLEGSGKYVQIVKRSMELHGQAGGPSRYPRLGLTVDEDQKLQTILSNIAAHVAV

Sequences:

>Translated_298_residues
MQKIKGAFPVLITPMDEFQEINWDGVKQNVNYFIEQKVAGVIINGSTGEFVSLSKEERFKMVETVLKEIDGRIPVIVGTA
AETTKETIEYTKHAEAHGADCALIINSYYCKPKEEEIYFHFKEISNSVNIPIMLYNNPFTSGVDMSTKLMLRIGKECENV
THIKESSGDIRKARDLVRQSEGAFQVFCGSEDLVMESYLVGASGWVSVAGNIVPGLVTKMYEHFQNGELEKAWEINDAIL
PLCEFLEGSGKYVQIVKRSMELHGQAGGPSRYPRLGLTVDEDQKLQTILSNIAAHVAV
>Mature_298_residues
MQKIKGAFPVLITPMDEFQEINWDGVKQNVNYFIEQKVAGVIINGSTGEFVSLSKEERFKMVETVLKEIDGRIPVIVGTA
AETTKETIEYTKHAEAHGADCALIINSYYCKPKEEEIYFHFKEISNSVNIPIMLYNNPFTSGVDMSTKLMLRIGKECENV
THIKESSGDIRKARDLVRQSEGAFQVFCGSEDLVMESYLVGASGWVSVAGNIVPGLVTKMYEHFQNGELEKAWEINDAIL
PLCEFLEGSGKYVQIVKRSMELHGQAGGPSRYPRLGLTVDEDQKLQTILSNIAAHVAV

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Homo sapiens, GI31543060, Length=287, Percent_Identity=25.4355400696864, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI13540533, Length=279, Percent_Identity=29.7491039426523, Blast_Score=98, Evalue=7e-21,
Organism=Escherichia coli, GI87082415, Length=267, Percent_Identity=28.0898876404494, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1786463, Length=263, Percent_Identity=28.5171102661597, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI1788823, Length=237, Percent_Identity=29.1139240506329, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789620, Length=234, Percent_Identity=24.3589743589744, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 33234; Mature: 33234

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS00665 DHDPS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKIKGAFPVLITPMDEFQEINWDGVKQNVNYFIEQKVAGVIINGSTGEFVSLSKEERFK
CCCCCCCCCEEECCHHHHHHCCCCHHHHHHHHHHHHCEEEEEEECCCCCEEECCHHHHHH
MVETVLKEIDGRIPVIVGTAAETTKETIEYTKHAEAHGADCALIINSYYCKPKEEEIYFH
HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHEEE
FKEISNSVNIPIMLYNNPFTSGVDMSTKLMLRIGKECENVTHIKESSGDIRKARDLVRQS
EEHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
EGAFQVFCGSEDLVMESYLVGASGWVSVAGNIVPGLVTKMYEHFQNGELEKAWEINDAIL
CCCEEEEECCCHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHH
PLCEFLEGSGKYVQIVKRSMELHGQAGGPSRYPRLGLTVDEDQKLQTILSNIAAHVAV
HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQKIKGAFPVLITPMDEFQEINWDGVKQNVNYFIEQKVAGVIINGSTGEFVSLSKEERFK
CCCCCCCCCEEECCHHHHHHCCCCHHHHHHHHHHHHCEEEEEEECCCCCEEECCHHHHHH
MVETVLKEIDGRIPVIVGTAAETTKETIEYTKHAEAHGADCALIINSYYCKPKEEEIYFH
HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHEEE
FKEISNSVNIPIMLYNNPFTSGVDMSTKLMLRIGKECENVTHIKESSGDIRKARDLVRQS
EEHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
EGAFQVFCGSEDLVMESYLVGASGWVSVAGNIVPGLVTKMYEHFQNGELEKAWEINDAIL
CCCEEEEECCCHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHH
PLCEFLEGSGKYVQIVKRSMELHGQAGGPSRYPRLGLTVDEDQKLQTILSNIAAHVAV
HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]