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The map label for this gene is yfiF [H]

Identifier: 218234187

GI number: 218234187

Start: 2453957

End: 2455183

Strand: Reverse

Name: yfiF [H]

Synonym: BCB4264_A2535

Alternate gene names: 218234187

Gene position: 2455183-2453957 (Counterclockwise)

Preceding gene: 218234198

Following gene: 218236069

Centisome position: 45.31

GC content: 29.5

Gene sequence:

>1227_bases
ATGACTAAAAAGCTCAGTCTAGTTGAGATAGAGTACATTTGCAATATGTTTTTCCAATCTTTTGAAATTCCAGTTTGTTT
TTTAGATTGTAACAAAAATATTCTTTTAGAATTCACATCAAAAAATGATTCACATTCGTTGTATACATCAAAAATAGAAC
AGTTACATGTGCTTTTTCAGAGAAATGATACATATAATTCACCCATCTTCAGAACTCACGAACATCTAGGGCACTTCATT
TTAATTCACATAAAGAGCGATTATATGGTGAACGGTACTGTTATTATTGGGCCCTTGGCACATGTGAATTTTTCTACAAG
TAAAACGGATAGTAACCTTAATTTCATTCCAAATTATAAAAGAACAAGAGACCATTATTTTTCATTGTCAGTCAAAGATC
AAAATTTCTTTGTAAATATAGCAATATTGTTCTATAACATTCTCTATAAAAAAAATTCAGATGTAAGCACATTTTCAAAT
AACAGTGACTCACTTCATATAAGTCATAGCAGAATCTTAAACGAAGATGTATATATTTCAATGCAAAAAGACGAATCCAT
TTATCATAATTTATATATAGAGCAGCAACTACTTGGTTCTATAGAAAACGGGGATAAAGAAACCGTACTCAAATATTATT
ACGAATTCCAACAAGAGACTCTTTCATCTTTATCTTCATTCCATCAATTAAGACGTCATAAAAACATTTGTATTTCATCC
ATCACGCTCGCTACTAGATATGCGATAAAAGGGGGACTTCCATCTGGGATTGCTTACAAAATTTATGATTTATATATTCA
AAGAACAGAAGATTTAAAAGACAAAGAATCTGTTTGGGATTTATTAAAAAATGCTTTTTGTACCTTTGCAGACCGTGTAA
AGGCACAAAAAACACAGCAACATTCACAGACTATTGCTATTTGCAAAAACTACATTTTTAAAAACATTTACAATCCAATA
TCTGTTAAACAACTTGCTAAATTTGCAAATGTGAATTCAGATTATTTATCTATATTATTTAAAAAAGAAGTCGGTATTTC
ATTAATTGAGTACATTCAACGTGAACGAATCGAAGAAGCAAAGAAATTATTAACTTTCACCACCTATCCTTTATCAGACA
TATGCGCTTCGCTTAATTTTAGCGATCAAAGTTATTTTACTAAAATTTTTAAAAAATTCACCAATGAAACACCTGGTAAA
TATCGAAAATCTCATGTTGTCATTTAG

Upstream 100 bases:

>100_bases
TTATTTATATTTTTTATTAATGAAGATTTTCCGTTTCTACTTATGAAAAAAGGAATATATGTTTATTTAGCTATTACGCA
TAACTGTAAGGAGGAAGAAT

Downstream 100 bases:

>100_bases
AGTGACACTTCCATTAAAGCAAAGTGTTTTCAGTAACTTATCAATGGCAAATTAGAAGTACTCCTATATTCATGAGCTAT
AGGATTTATGCTATTTTCAA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MTKKLSLVEIEYICNMFFQSFEIPVCFLDCNKNILLEFTSKNDSHSLYTSKIEQLHVLFQRNDTYNSPIFRTHEHLGHFI
LIHIKSDYMVNGTVIIGPLAHVNFSTSKTDSNLNFIPNYKRTRDHYFSLSVKDQNFFVNIAILFYNILYKKNSDVSTFSN
NSDSLHISHSRILNEDVYISMQKDESIYHNLYIEQQLLGSIENGDKETVLKYYYEFQQETLSSLSSFHQLRRHKNICISS
ITLATRYAIKGGLPSGIAYKIYDLYIQRTEDLKDKESVWDLLKNAFCTFADRVKAQKTQQHSQTIAICKNYIFKNIYNPI
SVKQLAKFANVNSDYLSILFKKEVGISLIEYIQRERIEEAKKLLTFTTYPLSDICASLNFSDQSYFTKIFKKFTNETPGK
YRKSHVVI

Sequences:

>Translated_408_residues
MTKKLSLVEIEYICNMFFQSFEIPVCFLDCNKNILLEFTSKNDSHSLYTSKIEQLHVLFQRNDTYNSPIFRTHEHLGHFI
LIHIKSDYMVNGTVIIGPLAHVNFSTSKTDSNLNFIPNYKRTRDHYFSLSVKDQNFFVNIAILFYNILYKKNSDVSTFSN
NSDSLHISHSRILNEDVYISMQKDESIYHNLYIEQQLLGSIENGDKETVLKYYYEFQQETLSSLSSFHQLRRHKNICISS
ITLATRYAIKGGLPSGIAYKIYDLYIQRTEDLKDKESVWDLLKNAFCTFADRVKAQKTQQHSQTIAICKNYIFKNIYNPI
SVKQLAKFANVNSDYLSILFKKEVGISLIEYIQRERIEEAKKLLTFTTYPLSDICASLNFSDQSYFTKIFKKFTNETPGK
YRKSHVVI
>Mature_407_residues
TKKLSLVEIEYICNMFFQSFEIPVCFLDCNKNILLEFTSKNDSHSLYTSKIEQLHVLFQRNDTYNSPIFRTHEHLGHFIL
IHIKSDYMVNGTVIIGPLAHVNFSTSKTDSNLNFIPNYKRTRDHYFSLSVKDQNFFVNIAILFYNILYKKNSDVSTFSNN
SDSLHISHSRILNEDVYISMQKDESIYHNLYIEQQLLGSIENGDKETVLKYYYEFQQETLSSLSSFHQLRRHKNICISSI
TLATRYAIKGGLPSGIAYKIYDLYIQRTEDLKDKESVWDLLKNAFCTFADRVKAQKTQQHSQTIAICKNYIFKNIYNPIS
VKQLAKFANVNSDYLSILFKKEVGISLIEYIQRERIEEAKKLLTFTTYPLSDICASLNFSDQSYFTKIFKKFTNETPGKY
RKSHVVI

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=83, Percent_Identity=32.5301204819277, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 47699; Mature: 47568

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKLSLVEIEYICNMFFQSFEIPVCFLDCNKNILLEFTSKNDSHSLYTSKIEQLHVLFQ
CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
RNDTYNSPIFRTHEHLGHFILIHIKSDYMVNGTVIIGPLAHVNFSTSKTDSNLNFIPNYK
CCCCCCCCCHHHHHCCCCEEEEEEECCEEEECEEEEECEEEEECCCCCCCCCCCCCCCCC
RTRDHYFSLSVKDQNFFVNIAILFYNILYKKNSDVSTFSNNSDSLHISHSRILNEDVYIS
CCCCEEEEEEEECCCEEEEHHHHHHHHHHCCCCCCCEECCCCCEEEEEHHHHCCCCEEEE
MQKDESIYHNLYIEQQLLGSIENGDKETVLKYYYEFQQETLSSLSSFHQLRRHKNICISS
EECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ITLATRYAIKGGLPSGIAYKIYDLYIQRTEDLKDKESVWDLLKNAFCTFADRVKAQKTQQ
HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSQTIAICKNYIFKNIYNPISVKQLAKFANVNSDYLSILFKKEVGISLIEYIQRERIEEA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
KKLLTFTTYPLSDICASLNFSDQSYFTKIFKKFTNETPGKYRKSHVVI
HHHHEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKKLSLVEIEYICNMFFQSFEIPVCFLDCNKNILLEFTSKNDSHSLYTSKIEQLHVLFQ
CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
RNDTYNSPIFRTHEHLGHFILIHIKSDYMVNGTVIIGPLAHVNFSTSKTDSNLNFIPNYK
CCCCCCCCCHHHHHCCCCEEEEEEECCEEEECEEEEECEEEEECCCCCCCCCCCCCCCCC
RTRDHYFSLSVKDQNFFVNIAILFYNILYKKNSDVSTFSNNSDSLHISHSRILNEDVYIS
CCCCEEEEEEEECCCEEEEHHHHHHHHHHCCCCCCCEECCCCCEEEEEHHHHCCCCEEEE
MQKDESIYHNLYIEQQLLGSIENGDKETVLKYYYEFQQETLSSLSSFHQLRRHKNICISS
EECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ITLATRYAIKGGLPSGIAYKIYDLYIQRTEDLKDKESVWDLLKNAFCTFADRVKAQKTQQ
HHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSQTIAICKNYIFKNIYNPISVKQLAKFANVNSDYLSILFKKEVGISLIEYIQRERIEEA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
KKLLTFTTYPLSDICASLNFSDQSYFTKIFKKFTNETPGKYRKSHVVI
HHHHEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8704981; 9384377 [H]