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The map label for this gene is yrkA [H]

Identifier: 218234095

GI number: 218234095

Start: 3246795

End: 3248123

Strand: Reverse

Name: yrkA [H]

Synonym: BCB4264_A3370

Alternate gene names: 218234095

Gene position: 3248123-3246795 (Counterclockwise)

Preceding gene: 218234659

Following gene: 218235901

Centisome position: 59.94

GC content: 36.34

Gene sequence:

>1329_bases
TTGGAAATATTTAATTTAGTCATGGTTGCGATTTTAATCGCATTTACTGGATTTTTCGTAGCAGCAGAGTTTGCGATTGT
AAAGATACGTTCAAGCCGTATCGATCAGCTTGTTGCGGAAGGAAAACGCGGTGCTTTAGCAGCGAAAAAGGTAACAACAA
ATTTAGATGAATATTTATCTGCTTGTCAATTAGGTATTACAGTTACAGCTATGGGATTAGGTTGGTTAGGTGAACCGACA
ATTGAAAAGTTATTACACCCGTTATTTGAGAAATGGAACTTAAATCCTTCTATTTCATCAGTACTAACATTTGGTCTTGC
TTTTATGATTATGACGTATTTACACGTTGTAGTAGGGGAATTAGCTCCAAAAACGATGGCAATTCAAAAGGCTGAAAGGG
TAACGTTATTATTGGCAGGTCCATTAATGATGTTCTATAAAGTAATGTATCCATTTATTTGGGTATTGAACGGTTCAGCT
CGTGTGATAACTGGTTTATTCGGTTTAAAGCCAGCTTCAGAACATGAAGTAGCTCATACAGAAGAAGAATTACGTCTTAT
CCTTTCAGATAGCTATGAAAGTGGCGAAATTAATCAAGCTGAATACAAGTATGTAAATAACATTTTTGAATTTGATAATC
GCATTGCAAAAGAGATTATGGTACCGCGAACAGAAATCGTTGGTTTCTACCTGGAAGATTCAGTAGAAGAACACATGAAA
GTAATCCAAAATGAGCGATACACACGTTATCCGATTTTTGGAGAAGATAAAGATGATATTATCGGTATGGTCAACGTAAA
AGATTTCTTTATTCGATATATGACCGAGGATCAAAAAGATTTATCATCTATTCGCTCGTATATGCGTCCGATTATTGAAG
TGATGGAAACGACTCCAATTCACGATTTATTACTTCAAATGCAGAAGAAGCGAATTCCGATGGCTGTTTTATATGATGAG
TACGGAGGAACAGCTGGAATTGTAACGCTTGAAGATATCTTGGAGGAAATCGTCGGCGAAATTCGTGACGAATATGATGA
AGATGAAGCACCACCAATTCAACATGTGAACGAGCAACATATTATTGTTGATGGAAAAGTGCTTATCTCAGAAGTGAAAG
ATTTATTTGGATTACACATCGAAGAAGATGATGTGGATACAATCGGTGGATGGATTATGATGCAAAATCATGAAATCGAA
GAAGGACAACACGTTGAGGCGGAAGGTTATGAATTTAAAGTGTTAGAAAAAGACGCTTACCAAATTAAACGTGTTGAAAT
TCGTAAGATGGAACAAGAACAAGAGGAAGAGAAAGCAGCAACTGTGTAA

Upstream 100 bases:

>100_bases
CTTTAATTTTTGTATCGGGCTATGTTTTCTAACAAACAAATAAGAAAACATTATAGTATACAGGAGGTGGACACCTTAGT
TTTTTAACTAAGGGGATTCA

Downstream 100 bases:

>100_bases
GTTGCTGCTTTTCTTCTAAGTATAAAAAATGCAAAATTAGGAGCGGATATTTTGATTCAAACAGCCTTACGTGTATATCG
ATTACAATTGTATGTAATCT

Product: CBS domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MEIFNLVMVAILIAFTGFFVAAEFAIVKIRSSRIDQLVAEGKRGALAAKKVTTNLDEYLSACQLGITVTAMGLGWLGEPT
IEKLLHPLFEKWNLNPSISSVLTFGLAFMIMTYLHVVVGELAPKTMAIQKAERVTLLLAGPLMMFYKVMYPFIWVLNGSA
RVITGLFGLKPASEHEVAHTEEELRLILSDSYESGEINQAEYKYVNNIFEFDNRIAKEIMVPRTEIVGFYLEDSVEEHMK
VIQNERYTRYPIFGEDKDDIIGMVNVKDFFIRYMTEDQKDLSSIRSYMRPIIEVMETTPIHDLLLQMQKKRIPMAVLYDE
YGGTAGIVTLEDILEEIVGEIRDEYDEDEAPPIQHVNEQHIIVDGKVLISEVKDLFGLHIEEDDVDTIGGWIMMQNHEIE
EGQHVEAEGYEFKVLEKDAYQIKRVEIRKMEQEQEEEKAATV

Sequences:

>Translated_442_residues
MEIFNLVMVAILIAFTGFFVAAEFAIVKIRSSRIDQLVAEGKRGALAAKKVTTNLDEYLSACQLGITVTAMGLGWLGEPT
IEKLLHPLFEKWNLNPSISSVLTFGLAFMIMTYLHVVVGELAPKTMAIQKAERVTLLLAGPLMMFYKVMYPFIWVLNGSA
RVITGLFGLKPASEHEVAHTEEELRLILSDSYESGEINQAEYKYVNNIFEFDNRIAKEIMVPRTEIVGFYLEDSVEEHMK
VIQNERYTRYPIFGEDKDDIIGMVNVKDFFIRYMTEDQKDLSSIRSYMRPIIEVMETTPIHDLLLQMQKKRIPMAVLYDE
YGGTAGIVTLEDILEEIVGEIRDEYDEDEAPPIQHVNEQHIIVDGKVLISEVKDLFGLHIEEDDVDTIGGWIMMQNHEIE
EGQHVEAEGYEFKVLEKDAYQIKRVEIRKMEQEQEEEKAATV
>Mature_442_residues
MEIFNLVMVAILIAFTGFFVAAEFAIVKIRSSRIDQLVAEGKRGALAAKKVTTNLDEYLSACQLGITVTAMGLGWLGEPT
IEKLLHPLFEKWNLNPSISSVLTFGLAFMIMTYLHVVVGELAPKTMAIQKAERVTLLLAGPLMMFYKVMYPFIWVLNGSA
RVITGLFGLKPASEHEVAHTEEELRLILSDSYESGEINQAEYKYVNNIFEFDNRIAKEIMVPRTEIVGFYLEDSVEEHMK
VIQNERYTRYPIFGEDKDDIIGMVNVKDFFIRYMTEDQKDLSSIRSYMRPIIEVMETTPIHDLLLQMQKKRIPMAVLYDE
YGGTAGIVTLEDILEEIVGEIRDEYDEDEAPPIQHVNEQHIIVDGKVLISEVKDLFGLHIEEDDVDTIGGWIMMQNHEIE
EGQHVEAEGYEFKVLEKDAYQIKRVEIRKMEQEQEEEKAATV

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=404, Percent_Identity=47.2772277227723, Blast_Score=389, Evalue=1e-108,
Organism=Escherichia coli, GI1790664, Length=432, Percent_Identity=23.3796296296296, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI145693175, Length=426, Percent_Identity=25.3521126760563, Blast_Score=141, Evalue=9e-35,
Organism=Escherichia coli, GI1786879, Length=255, Percent_Identity=30.1960784313725, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082033, Length=270, Percent_Identity=25.1851851851852, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788119, Length=246, Percent_Identity=25.609756097561, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17539402, Length=261, Percent_Identity=25.6704980842912, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 50579; Mature: 50579

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIFNLVMVAILIAFTGFFVAAEFAIVKIRSSRIDQLVAEGKRGALAAKKVTTNLDEYLS
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHH
ACQLGITVTAMGLGWLGEPTIEKLLHPLFEKWNLNPSISSVLTFGLAFMIMTYLHVVVGE
HHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAPKTMAIQKAERVTLLLAGPLMMFYKVMYPFIWVLNGSARVITGLFGLKPASEHEVAHT
HCCHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCCCHHCC
EEELRLILSDSYESGEINQAEYKYVNNIFEFDNRIAKEIMVPRTEIVGFYLEDSVEEHMK
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VIQNERYTRYPIFGEDKDDIIGMVNVKDFFIRYMTEDQKDLSSIRSYMRPIIEVMETTPI
HHHCCCCEECCCCCCCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
HDLLLQMQKKRIPMAVLYDEYGGTAGIVTLEDILEEIVGEIRDEYDEDEAPPIQHVNEQH
HHHHHHHHHHCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCE
IIVDGKVLISEVKDLFGLHIEEDDVDTIGGWIMMQNHEIEEGQHVEAEGYEFKVLEKDAY
EEEEHHHHHHHHHHHHCCCCCCCCCHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCHHH
QIKRVEIRKMEQEQEEEKAATV
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIFNLVMVAILIAFTGFFVAAEFAIVKIRSSRIDQLVAEGKRGALAAKKVTTNLDEYLS
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHH
ACQLGITVTAMGLGWLGEPTIEKLLHPLFEKWNLNPSISSVLTFGLAFMIMTYLHVVVGE
HHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAPKTMAIQKAERVTLLLAGPLMMFYKVMYPFIWVLNGSARVITGLFGLKPASEHEVAHT
HCCHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCCCHHCC
EEELRLILSDSYESGEINQAEYKYVNNIFEFDNRIAKEIMVPRTEIVGFYLEDSVEEHMK
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VIQNERYTRYPIFGEDKDDIIGMVNVKDFFIRYMTEDQKDLSSIRSYMRPIIEVMETTPI
HHHCCCCEECCCCCCCCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
HDLLLQMQKKRIPMAVLYDEYGGTAGIVTLEDILEEIVGEIRDEYDEDEAPPIQHVNEQH
HHHHHHHHHHCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCE
IIVDGKVLISEVKDLFGLHIEEDDVDTIGGWIMMQNHEIEEGQHVEAEGYEFKVLEKDAY
EEEEHHHHHHHHHHHHCCCCCCCCCHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCHHH
QIKRVEIRKMEQEQEEEKAATV
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 8969508; 7608059 [H]