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The map label for this gene is yofA [H]

Identifier: 218234079

GI number: 218234079

Start: 1847047

End: 1847835

Strand: Reverse

Name: yofA [H]

Synonym: BCB4264_A1936

Alternate gene names: 218234079

Gene position: 1847835-1847047 (Counterclockwise)

Preceding gene: 218232158

Following gene: 218231441

Centisome position: 34.1

GC content: 30.29

Gene sequence:

>789_bases
TTGGAAATAAATGATCTTATTATATTCAAAACTGTAGCCAGTGAGGGTTCTATTAGTAAAGCTGCTAAAGAGTTAGGATA
TGTTCAACCGAACGTAACTGAGCGAATTAAAAAATTAGAACAAGAGTTAGAAACACCTTTACTACATAGAGATAACAAAG
GCGTTTCCTTATTACCTGCTGGTGACATTTTATTAGATTACACGAATAAAATATTAACTCTATTAGAAGAAGTAAAAGAT
GAAATTAAAACGAGTGGTTCTTCTTATATAATAGCGACGTCACAATCTATTTTGACAAATTATTTAAGTAAGCGTATTGA
AGAAAACTTTAGAAATTATCAAATATATGTAGAAAGTAGTAGTCATTTGCAAAAATTACTGCAGCAACAAAAAGTTGATA
TGGTCATAACTTATGAGGATTATCCTGACGCATCGTTTAAAAAAGTGTTCACGACCTCAATTTCTGTAGGCTTATTAAAA
GCGAAAGAAAAATGTACCATTGATTATTCAAAAGAAATTTTCTTCGTTAGCAATGACAAAAAGTGCCCTTTTAGAAATAA
GACGATACAATTTCTAAAAGAAAATAATTTATCTCAGCGTCAACTTCAACAATTAGATTCTTATTCGCTTATGGAAGAGT
TTATTCAGGACGGAAAAGGGATAGCCTTTTTGCCGATTAAAAATGATAAATTGGTACCAATTGAAGATGTTCCAGTTGAG
AAATTAGCTGTTCATTTTTTTACAAATCAAAACTCTTTCAAACAAATCCCTGATGAACTATTTGGTTAA

Upstream 100 bases:

>100_bases
CTTATATACATTATGATAAATCGATAAGTGGCTAACGTAAAATAGGTATAAATTATGTTTGGTATCATTTATAATGATAG
TGCATAAGGGGCTGAGATAC

Downstream 100 bases:

>100_bases
TAAAAAATCCCTCCTTTATGAATCTAAAAGAGGGATTTTCATATTCTATACAATTGATTTTTCACACATTTTGCTCCACT
TCTGCACTTTTCTCCTTCTT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MEINDLIIFKTVASEGSISKAAKELGYVQPNVTERIKKLEQELETPLLHRDNKGVSLLPAGDILLDYTNKILTLLEEVKD
EIKTSGSSYIIATSQSILTNYLSKRIEENFRNYQIYVESSSHLQKLLQQQKVDMVITYEDYPDASFKKVFTTSISVGLLK
AKEKCTIDYSKEIFFVSNDKKCPFRNKTIQFLKENNLSQRQLQQLDSYSLMEEFIQDGKGIAFLPIKNDKLVPIEDVPVE
KLAVHFFTNQNSFKQIPDELFG

Sequences:

>Translated_262_residues
MEINDLIIFKTVASEGSISKAAKELGYVQPNVTERIKKLEQELETPLLHRDNKGVSLLPAGDILLDYTNKILTLLEEVKD
EIKTSGSSYIIATSQSILTNYLSKRIEENFRNYQIYVESSSHLQKLLQQQKVDMVITYEDYPDASFKKVFTTSISVGLLK
AKEKCTIDYSKEIFFVSNDKKCPFRNKTIQFLKENNLSQRQLQQLDSYSLMEEFIQDGKGIAFLPIKNDKLVPIEDVPVE
KLAVHFFTNQNSFKQIPDELFG
>Mature_262_residues
MEINDLIIFKTVASEGSISKAAKELGYVQPNVTERIKKLEQELETPLLHRDNKGVSLLPAGDILLDYTNKILTLLEEVKD
EIKTSGSSYIIATSQSILTNYLSKRIEENFRNYQIYVESSSHLQKLLQQQKVDMVITYEDYPDASFKKVFTTSISVGLLK
AKEKCTIDYSKEIFFVSNDKKCPFRNKTIQFLKENNLSQRQLQQLDSYSLMEEFIQDGKGIAFLPIKNDKLVPIEDVPVE
KLAVHFFTNQNSFKQIPDELFG

Specific function: Regulates expression of the cell division protein ftsW, and is essential for cell viability during stationary phase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788297, Length=257, Percent_Identity=24.5136186770428, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=89, Percent_Identity=37.0786516853933, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30064; Mature: 30064

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEINDLIIFKTVASEGSISKAAKELGYVQPNVTERIKKLEQELETPLLHRDNKGVSLLPA
CCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHCCCCCCEEEEEC
GDILLDYTNKILTLLEEVKDEIKTSGSSYIIATSQSILTNYLSKRIEENFRNYQIYVESS
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEECH
SHLQKLLQQQKVDMVITYEDYPDASFKKVFTTSISVGLLKAKEKCTIDYSKEIFFVSNDK
HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCC
KCPFRNKTIQFLKENNLSQRQLQQLDSYSLMEEFIQDGKGIAFLPIKNDKLVPIEDVPVE
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHH
KLAVHFFTNQNSFKQIPDELFG
HEEEEEECCCCHHHHCHHHHCC
>Mature Secondary Structure
MEINDLIIFKTVASEGSISKAAKELGYVQPNVTERIKKLEQELETPLLHRDNKGVSLLPA
CCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHCCCCCCEEEEEC
GDILLDYTNKILTLLEEVKDEIKTSGSSYIIATSQSILTNYLSKRIEENFRNYQIYVESS
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEECH
SHLQKLLQQQKVDMVITYEDYPDASFKKVFTTSISVGLLKAKEKCTIDYSKEIFFVSNDK
HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEECCC
KCPFRNKTIQFLKENNLSQRQLQQLDSYSLMEEFIQDGKGIAFLPIKNDKLVPIEDVPVE
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHH
KLAVHFFTNQNSFKQIPDELFG
HEEEEEECCCCHHHHCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]