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The map label for this gene is ydhM [C]

Identifier: 218234033

GI number: 218234033

Start: 2804441

End: 2805031

Strand: Reverse

Name: ydhM [C]

Synonym: BCB4264_A2934

Alternate gene names: 218234033

Gene position: 2805031-2804441 (Counterclockwise)

Preceding gene: 218234324

Following gene: 218232837

Centisome position: 51.76

GC content: 31.3

Gene sequence:

>591_bases
ATGAAAAGAATATCAAAAGAACCAGATGTAAGACGCCAAGAGTTAATGGATATTGGTTTTGAACTATATATGAAAAATGG
TATGAAAGGATTTGGCATAAAAGATGTTGTGAATCATGCAGGTGTAGCAACGGGCTTATTTTATTATTACTTCAAGTCTA
AAGAGAATTTTGTTGATGAAGTTTTAAATGACTTTATTGTGAAAAATATGGAGTTAATTGAAGAAATACTTATTTCAAAT
GAACGGTCTGTCATGCAAAAGATGAAAGATTCACTAGATATATTTTGGACATTTATTGAAAAGTTAGCACCCTATAAAAA
TGTGAGTTCGTTTCAGACGGAACAACATTTTCAACTGGAACAGAAATTATTCGCACGTATGCAACCGTTAATTAGACAAG
TAATTGAAGAGGGAGTGAAAACAGGGATTTTTTATACTGATAACTCATTATTAGCTTCTGGGTTTATTTTATACGGTCTT
AGCAGTATTGCTCATTCAGAAGTAAAGTTGAACCTAGATACAAAACAAGAAATGGTTAATTTAGTATTAACTACACTACG
ATGCAATCAAAAGGAAGGAGAGAGTATATGA

Upstream 100 bases:

>100_bases
ATCGATTTTAAATTTATGAAATAATATTGACTGAATCAAGTTCAGTCATTTATGATTGAATCAGATTCAGTCGTGGTGAA
AACATTGTAGGAGATGACGT

Downstream 100 bases:

>100_bases
AGATTATTATCGATGGAAATAATATCTCACAAGAGCAACTTATAAAATGGAAAAGAGAACGGATAAAAAAAGTATTATAT
ATATTAGGACATAAAGAGTC

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDEVLNDFIVKNMELIEEILISN
ERSVMQKMKDSLDIFWTFIEKLAPYKNVSSFQTEQHFQLEQKLFARMQPLIRQVIEEGVKTGIFYTDNSLLASGFILYGL
SSIAHSEVKLNLDTKQEMVNLVLTTLRCNQKEGESI

Sequences:

>Translated_196_residues
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDEVLNDFIVKNMELIEEILISN
ERSVMQKMKDSLDIFWTFIEKLAPYKNVSSFQTEQHFQLEQKLFARMQPLIRQVIEEGVKTGIFYTDNSLLASGFILYGL
SSIAHSEVKLNLDTKQEMVNLVLTTLRCNQKEGESI
>Mature_196_residues
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDEVLNDFIVKNMELIEEILISN
ERSVMQKMKDSLDIFWTFIEKLAPYKNVSSFQTEQHFQLEQKLFARMQPLIRQVIEEGVKTGIFYTDNSLLASGFILYGL
SSIAHSEVKLNLDTKQEMVNLVLTTLRCNQKEGESI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22759; Mature: 22759

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VLNDFIVKNMELIEEILISNERSVMQKMKDSLDIFWTFIEKLAPYKNVSSFQTEQHFQLE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QKLFARMQPLIRQVIEEGVKTGIFYTDNSLLASGFILYGLSSIAHSEVKLNLDTKQEMVN
HHHHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHH
LVLTTLRCNQKEGESI
HHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VLNDFIVKNMELIEEILISNERSVMQKMKDSLDIFWTFIEKLAPYKNVSSFQTEQHFQLE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QKLFARMQPLIRQVIEEGVKTGIFYTDNSLLASGFILYGLSSIAHSEVKLNLDTKQEMVN
HHHHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHH
LVLTTLRCNQKEGESI
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA