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The map label for this gene is yhdW [H]

Identifier: 218234013

GI number: 218234013

Start: 611766

End: 613637

Strand: Direct

Name: yhdW [H]

Synonym: BCB4264_A0629

Alternate gene names: 218234013

Gene position: 611766-613637 (Clockwise)

Preceding gene: 218234760

Following gene: 218232919

Centisome position: 11.29

GC content: 33.49

Gene sequence:

>1872_bases
ATGCAACACCGTAAAAAACTATCTATACCAGGAGTAATGAGACATTCCTTTCAAACAGTTAAATTTGCTTTTTGGAATGT
ATTAACTTTTCAACTTGCTTATAAATTATTAGCAGCGATTGTGTTTGTTCCGCTATTTGGAATCATTTTTAATAAGTTAT
TGTATTTTGGTGGTTATGCAAATGCGACAAATGATGAATTATTAGCGTTTTTAAAGACGCCTTATGGCATCTTAGCAATT
GTAATTTTATCATTGTTAGCACTGTTTCTTATCTTTACAGAATTTGCGGTGCTTATTATTATTTCGTATTTCGCTCATAA
AAGACAGAAGGTGAAATTACGTCCGATTTTATATAAAACGGTGACGTATTTACCTACTCTTTTCACATATTGCTTACCAG
GATTTATTTTATATGCTGTCGTATTGTTGCCTCTTTTAAATATGGGATATGAAACGGCATTAATCCCGCAAATTCAAATT
CCTAACTTTATTACAGGAGAACTGTTTAAGACAACGATGGGACAAGTTGGTTATTACACGTTCTTTGCTGTAGTCGCGTA
TTTGAATCTTCGATGGATTTTCGTTCTACCTATTGTTGTTTTAGAGCAAAAACCATTTCGCGTGGCAGCACGTAAAAGTG
CAACTTTAGTAAAGGAAAGCTTTTTTAAAGTACTATTCTTTTTAGTAGGATTTTTTATCTCAATTGGAATTGTATATGTC
GTGTTTTTGGGAATGTATTTATTGTGCCTATGGGGTGTTTATGAATTTACAAACCCGAAAGGAACATTTGCATTATTAGC
TGAATCAACGATTTCTGTATTTTTAACGAGTACATTGTATTTATTCAGCTTTATCGTGACGCCATTTTATATTATGGCGA
TTACGCGATTATACTTACAAAAGGTTCCAGTTGAGGATGTTTTATTAGAAGAAGGATTAGATTATTCGAAAACGAAAGCA
GATAAATGTTTCTTCCAAAAACATCGTTGGAAATTCATTGGCGTATACATTGTAGGAATTATTACTGCGGGAATGGTCGT
TGCCTTCATTGTAACGTTTATTTCAAATTCGTATAAAGAACCGATTATTATGGCGCACCGCGGGTATATATCAAAAGGCG
TAGAAAATACGAAAGAAGCTGTGCAAGGTGCTATTGATGCAAAAGCAGACTACGCTGAAATAGATGTATTACAAACGAAA
GACGGTGAACTAGCGGTTATACATGATTTGAAGCTGAAACGTCTCGCAAATGCCAATGTGCATGTGTCAGATTTAACGAT
GGCGGAGTTAAGGCAGCTTACCCTTAGTCAAGATGGACTTTCAGGACAAATAAGTACACTTGATGAAATCATTAAGCTAG
CAAATGGCAAAATCAAACTTAATATAGAAGTGAAGCTTCATGGGGGCGAAAAAGATTTTGTAAACAAAGTCTTAAAAACG
ATTAAAGATAATGAATTTGAGAAGCAATGTGTAATTCAAACGTTACACTATCCACTTATTAAAGAGTTTAAGCGTGCAAA
TCCAGATATAAAAGTAGGGTATATACTGTATGCAAGTAGAGCTAACTTAAAGAATGTGAAGGCTGACTTTTACGTAGCGG
AAGAATATATGTTAAATAAGAAATTAGTAAAAGAAGCAAGGAAGTTAAACAAACCAATTTACGTATGGACAGTAAATGAT
ATGGAAAATTTAAAGGCATATTATAAGTTAAACGTAGATGGTATTATAACCGATTACCCTGAAGATGCACGTGAAACAAT
TAAGATGTTAAAAGAGCAAGAAGCGGAAGAAAGTGATCTGTTTGATAAAATTACTGAAACGACAGATGATTTATTTTCTA
AGTTATTTATAAGTTACCCAGCTGCTAGCTAA

Upstream 100 bases:

>100_bases
TGTGTTCATGTTAAGCGGAATATATTATTATTAAAAAGATGGATTAGAACTGGAAATATGGAATCCATCTCAAATACCGT
TTTAGAATTTGGAGGAATAT

Downstream 100 bases:

>100_bases
ATGCTAGCAGCTGTTTTTTTGTGAAAAGAATATATCTCTAAAGTATTGAGTAAAGTAATAACTGTATATGTATACGTTAT
CGCTTAGGTTTCTTACATTG

Product: glycerophosphoryl diester phosphodiesterase family protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 623; Mature: 623

Protein sequence:

>623_residues
MQHRKKLSIPGVMRHSFQTVKFAFWNVLTFQLAYKLLAAIVFVPLFGIIFNKLLYFGGYANATNDELLAFLKTPYGILAI
VILSLLALFLIFTEFAVLIIISYFAHKRQKVKLRPILYKTVTYLPTLFTYCLPGFILYAVVLLPLLNMGYETALIPQIQI
PNFITGELFKTTMGQVGYYTFFAVVAYLNLRWIFVLPIVVLEQKPFRVAARKSATLVKESFFKVLFFLVGFFISIGIVYV
VFLGMYLLCLWGVYEFTNPKGTFALLAESTISVFLTSTLYLFSFIVTPFYIMAITRLYLQKVPVEDVLLEEGLDYSKTKA
DKCFFQKHRWKFIGVYIVGIITAGMVVAFIVTFISNSYKEPIIMAHRGYISKGVENTKEAVQGAIDAKADYAEIDVLQTK
DGELAVIHDLKLKRLANANVHVSDLTMAELRQLTLSQDGLSGQISTLDEIIKLANGKIKLNIEVKLHGGEKDFVNKVLKT
IKDNEFEKQCVIQTLHYPLIKEFKRANPDIKVGYILYASRANLKNVKADFYVAEEYMLNKKLVKEARKLNKPIYVWTVND
MENLKAYYKLNVDGIITDYPEDARETIKMLKEQEAEESDLFDKITETTDDLFSKLFISYPAAS

Sequences:

>Translated_623_residues
MQHRKKLSIPGVMRHSFQTVKFAFWNVLTFQLAYKLLAAIVFVPLFGIIFNKLLYFGGYANATNDELLAFLKTPYGILAI
VILSLLALFLIFTEFAVLIIISYFAHKRQKVKLRPILYKTVTYLPTLFTYCLPGFILYAVVLLPLLNMGYETALIPQIQI
PNFITGELFKTTMGQVGYYTFFAVVAYLNLRWIFVLPIVVLEQKPFRVAARKSATLVKESFFKVLFFLVGFFISIGIVYV
VFLGMYLLCLWGVYEFTNPKGTFALLAESTISVFLTSTLYLFSFIVTPFYIMAITRLYLQKVPVEDVLLEEGLDYSKTKA
DKCFFQKHRWKFIGVYIVGIITAGMVVAFIVTFISNSYKEPIIMAHRGYISKGVENTKEAVQGAIDAKADYAEIDVLQTK
DGELAVIHDLKLKRLANANVHVSDLTMAELRQLTLSQDGLSGQISTLDEIIKLANGKIKLNIEVKLHGGEKDFVNKVLKT
IKDNEFEKQCVIQTLHYPLIKEFKRANPDIKVGYILYASRANLKNVKADFYVAEEYMLNKKLVKEARKLNKPIYVWTVND
MENLKAYYKLNVDGIITDYPEDARETIKMLKEQEAEESDLFDKITETTDDLFSKLFISYPAAS
>Mature_623_residues
MQHRKKLSIPGVMRHSFQTVKFAFWNVLTFQLAYKLLAAIVFVPLFGIIFNKLLYFGGYANATNDELLAFLKTPYGILAI
VILSLLALFLIFTEFAVLIIISYFAHKRQKVKLRPILYKTVTYLPTLFTYCLPGFILYAVVLLPLLNMGYETALIPQIQI
PNFITGELFKTTMGQVGYYTFFAVVAYLNLRWIFVLPIVVLEQKPFRVAARKSATLVKESFFKVLFFLVGFFISIGIVYV
VFLGMYLLCLWGVYEFTNPKGTFALLAESTISVFLTSTLYLFSFIVTPFYIMAITRLYLQKVPVEDVLLEEGLDYSKTKA
DKCFFQKHRWKFIGVYIVGIITAGMVVAFIVTFISNSYKEPIIMAHRGYISKGVENTKEAVQGAIDAKADYAEIDVLQTK
DGELAVIHDLKLKRLANANVHVSDLTMAELRQLTLSQDGLSGQISTLDEIIKLANGKIKLNIEVKLHGGEKDFVNKVLKT
IKDNEFEKQCVIQTLHYPLIKEFKRANPDIKVGYILYASRANLKNVKADFYVAEEYMLNKKLVKEARKLNKPIYVWTVND
MENLKAYYKLNVDGIITDYPEDARETIKMLKEQEAEESDLFDKITETTDDLFSKLFISYPAAS

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI260763876, Length=303, Percent_Identity=22.1122112211221, Blast_Score=73, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 71167; Mature: 71167

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHRKKLSIPGVMRHSFQTVKFAFWNVLTFQLAYKLLAAIVFVPLFGIIFNKLLYFGGYA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NATNDELLAFLKTPYGILAIVILSLLALFLIFTEFAVLIIISYFAHKRQKVKLRPILYKT
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHH
VTYLPTLFTYCLPGFILYAVVLLPLLNMGYETALIPQIQIPNFITGELFKTTMGQVGYYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
FFAVVAYLNLRWIFVLPIVVLEQKPFRVAARKSATLVKESFFKVLFFLVGFFISIGIVYV
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFLGMYLLCLWGVYEFTNPKGTFALLAESTISVFLTSTLYLFSFIVTPFYIMAITRLYLQ
HHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVPVEDVLLEEGLDYSKTKADKCFFQKHRWKFIGVYIVGIITAGMVVAFIVTFISNSYKE
HCCHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PIIMAHRGYISKGVENTKEAVQGAIDAKADYAEIDVLQTKDGELAVIHDLKLKRLANANV
CEEEEECCHHHHCHHHHHHHHHHHHCCCCCHHHEEEEECCCCCEEEEEHHHHHHHCCCCC
HVSDLTMAELRQLTLSQDGLSGQISTLDEIIKLANGKIKLNIEVKLHGGEKDFVNKVLKT
EEHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCCHHHHHHHHHH
IKDNEFEKQCVIQTLHYPLIKEFKRANPDIKVGYILYASRANLKNVKADFYVAEEYMLNK
HCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHEEHHHHHHHH
KLVKEARKLNKPIYVWTVNDMENLKAYYKLNVDGIITDYPEDARETIKMLKEQEAEESDL
HHHHHHHHCCCCEEEEECCCHHHCHHHEEEEECCEECCCCHHHHHHHHHHHHHCCHHHHH
FDKITETTDDLFSKLFISYPAAS
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]