Click here to switch to the map view.

The map label for this gene is yrdC [H]

Identifier: 218233677

GI number: 218233677

Start: 1366391

End: 1366945

Strand: Direct

Name: yrdC [H]

Synonym: BCB4264_A1416

Alternate gene names: 218233677

Gene position: 1366391-1366945 (Clockwise)

Preceding gene: 218231712

Following gene: 218235231

Centisome position: 25.21

GC content: 34.05

Gene sequence:

>555_bases
ATGACAAATCAAATAGCACTTATCATAATCGATGTACAAAAGGCATTTCAATTACCAGATTGGGGCGAGAGAAATAATAT
TTTTGCTGAAGAAAACATGAGAATTTTGTTAGAAGAATGGAGAAAAAGGGAACGACCAGTTTTTCATATTCAACATGTAA
ATAAAGAAAATGCTCAGTCAATGTTTTATGAGAGAGCGGAAACGGTAAACTTTAAAGAAGAAGTGCAACCACTACTTGGT
GAAGTGGTTATTCAGAAATTCGTTAACAGCGCGTTCATTGGGACAAATTTAGAAGAGCAATTAAGAAAGAACAAATGTAA
TGCAGTAGTGGTTGTAGGATTAACGACAAATCATTGCGTGGAAACTACGACACGAATGGCAGGGAATTTAGGATTTACAA
CATATTTAGTGAGTGATGCAACGGCTACTTTTAACCGTATAGGTTTAGATGGTAAAGAGTATAGTGCAGAAGATATTCAC
AATATGACACTTGTAAATTTACATGAAGAGTTTGCTACGATTGTGACGACAAAAGAAGTGTTAAAATTATTTTAA

Upstream 100 bases:

>100_bases
GAAAAAGAAATTGTAGAGCTTTGCGCCTATGTTTGCTTTATTACTGCGTCACAACAACTTGGTTTTCTATTTCAATTACA
GCCAAATTAAGGGGGAAATG

Downstream 100 bases:

>100_bases
GAAAATAATTGCGAATTATGTAGAAAAAAATAAGAATATTTCGTATAATCTAAGTACAATCATTTTGAAAATAGGGGTGG
CATCATATGGAGCAAATTTC

Product: isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MTNQIALIIIDVQKAFQLPDWGERNNIFAEENMRILLEEWRKRERPVFHIQHVNKENAQSMFYERAETVNFKEEVQPLLG
EVVIQKFVNSAFIGTNLEEQLRKNKCNAVVVVGLTTNHCVETTTRMAGNLGFTTYLVSDATATFNRIGLDGKEYSAEDIH
NMTLVNLHEEFATIVTTKEVLKLF

Sequences:

>Translated_184_residues
MTNQIALIIIDVQKAFQLPDWGERNNIFAEENMRILLEEWRKRERPVFHIQHVNKENAQSMFYERAETVNFKEEVQPLLG
EVVIQKFVNSAFIGTNLEEQLRKNKCNAVVVVGLTTNHCVETTTRMAGNLGFTTYLVSDATATFNRIGLDGKEYSAEDIH
NMTLVNLHEEFATIVTTKEVLKLF
>Mature_183_residues
TNQIALIIIDVQKAFQLPDWGERNNIFAEENMRILLEEWRKRERPVFHIQHVNKENAQSMFYERAETVNFKEEVQPLLGE
VVIQKFVNSAFIGTNLEEQLRKNKCNAVVVVGLTTNHCVETTTRMAGNLGFTTYLVSDATATFNRIGLDGKEYSAEDIHN
MTLVNLHEEFATIVTTKEVLKLF

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 21163; Mature: 21032

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNQIALIIIDVQKAFQLPDWGERNNIFAEENMRILLEEWRKRERPVFHIQHVNKENAQS
CCCCEEEEEEEEHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHH
MFYERAETVNFKEEVQPLLGEVVIQKFVNSAFIGTNLEEQLRKNKCNAVVVVGLTTNHCV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCHHH
ETTTRMAGNLGFTTYLVSDATATFNRIGLDGKEYSAEDIHNMTLVNLHEEFATIVTTKEV
HHHHHHHCCCCHHEEEECCCHHHHHHCCCCCCCCCHHHHHCCCEEEHHHHHHHHHHHHHH
LKLF
HHCC
>Mature Secondary Structure 
TNQIALIIIDVQKAFQLPDWGERNNIFAEENMRILLEEWRKRERPVFHIQHVNKENAQS
CCCEEEEEEEEHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHH
MFYERAETVNFKEEVQPLLGEVVIQKFVNSAFIGTNLEEQLRKNKCNAVVVVGLTTNHCV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCHHH
ETTTRMAGNLGFTTYLVSDATATFNRIGLDGKEYSAEDIHNMTLVNLHEEFATIVTTKEV
HHHHHHHCCCCHHEEEECCCHHHHHHCCCCCCCCCHHHHHCCCEEEHHHHHHHHHHHHHH
LKLF
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 9287000 [H]