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The map label for this gene is fliD [H]

Identifier: 218233660

GI number: 218233660

Start: 1625398

End: 1626780

Strand: Direct

Name: fliD [H]

Synonym: BCB4264_A1706

Alternate gene names: 218233660

Gene position: 1625398-1626780 (Clockwise)

Preceding gene: 218236044

Following gene: 218234467

Centisome position: 29.99

GC content: 33.84

Gene sequence:

>1383_bases
ATGGCAGGAACAACGATGACAGGTATTGGTGGTAGACAACAAATTTGGAACCTTGGAAATAATATGATTGATACTTCTAA
CCTAGTAGAATTAGAGATGCAAGCGTTAGATATGAGGAAAACACCGTATACTACTGAGAAGCAAAAACTTACGGAAGATA
AACAAGTATATGCAAGTTTAAAGACACAATTTACTCCTTTTACTCAAGTGTTTAAAGATTTAGCAGCTTTTAAAGGGAAT
GAGAAAAAAGTAACGACAACACAAGACGGCTACATTAATGTGAAAGCTGATGGTGGGGCGATTGCAGGAACTTTTAATAT
GACGATTACACAGCTTGCGCAACGTCATCAAATAGCTTCAAATGACATTAAAGATATAAATGCGAAACTTCCTAAAGATG
AAACATTAAAACTAGGCGGTAAAGAATTAAAAGTAACAACTGATATGACATATAAAGATTTAATTAATAAGATTAATGAT
GGAGATTATGGCGTATCAGCTTATACACTTGGAAATAAAATTTTCATGACCTCGAAAAAAGAAGGAACAGATGGACAGAT
TAAGTTTGAGGGGAACACATCTACACTATTTCAAGATATTGGTTTAGCTAATGCGGATGGCCTAGCGCTTAATACAATCA
ATGAAGCACAAAATGCTAAATATAGTATTAATGGTATTGAAGCTGAAAGTTTTACTAATACAATTGAGGCTCTTCCGGGT
GTGAAAATTGAATTGTTAAAAGTAACTGAGCCAAAAGTAGAAGGGACACCAGATACCGGTACAACCACAGATCCAAAAAC
AAAAGGTGTAGAATTAAAATTTACGGTAAGTGATTCCAATGTAACAGACACAGCCAATATTATTAAAAAGATGGTAGCAG
AGTATAATAAAGCAGTTTCTACAGTTGACCTTTTTGCTGGGAAAGACGGAGTTTTCCAAGGGCAGGTAATTATGCAAAGC
GTACGTCAAGCGATGAACAATGTTGCAACATTTTCTCAAGATGGTAATTATTTATTCACATTCGGTATTCAATTAAAGCA
AGATGGAACGATGGAAGTTAATGATGAAAAATTAACACAAGCATTAAAAGAAAAACCTGATGCAGCGAAGCAATTTTTCT
TTAGTTCTAACGGTTTAGGAAAAATGATGGAAGAACCACTTGATAAAATATTCGGTGATAAAGGTGTAGTTGGAGAACGT
GTGAAAAATATTGATTCACGTGTAAGTGATTTAGATAAAAAGATTAAAGATATTGAAACGCAAAACTTGCAAAAGCAAGA
TGAAATTGTGAAGAAGTATCAAAAGCTAGAGAGTACATTAGCAGCGCTTGATAGCCAACTAAAAACAATTAAAGCAATGA
CAAAACAAAAAAGTGATGATTAA

Upstream 100 bases:

>100_bases
GCATATATAAATGCAACGTATGAAGCGACGCTTAAAGCAGTTAGTACGATGAGTAAAACAAGTATTTTAGACTACATGTA
ATCTATAAGGAGTGAGAACA

Downstream 100 bases:

>100_bases
TGAAAGTTGAGGAAGTGATCGTATGCAAGCATGGCAACGTTATATGCAAAATGATATTATGACGAGTAATCCGATTAAAA
ATACAATTTTTATTTATGAA

Product: flagellar capping protein

Products: NA

Alternate protein names: HAP2; Filament cap protein [H]

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MAGTTMTGIGGRQQIWNLGNNMIDTSNLVELEMQALDMRKTPYTTEKQKLTEDKQVYASLKTQFTPFTQVFKDLAAFKGN
EKKVTTTQDGYINVKADGGAIAGTFNMTITQLAQRHQIASNDIKDINAKLPKDETLKLGGKELKVTTDMTYKDLINKIND
GDYGVSAYTLGNKIFMTSKKEGTDGQIKFEGNTSTLFQDIGLANADGLALNTINEAQNAKYSINGIEAESFTNTIEALPG
VKIELLKVTEPKVEGTPDTGTTTDPKTKGVELKFTVSDSNVTDTANIIKKMVAEYNKAVSTVDLFAGKDGVFQGQVIMQS
VRQAMNNVATFSQDGNYLFTFGIQLKQDGTMEVNDEKLTQALKEKPDAAKQFFFSSNGLGKMMEEPLDKIFGDKGVVGER
VKNIDSRVSDLDKKIKDIETQNLQKQDEIVKKYQKLESTLAALDSQLKTIKAMTKQKSDD

Sequences:

>Translated_460_residues
MAGTTMTGIGGRQQIWNLGNNMIDTSNLVELEMQALDMRKTPYTTEKQKLTEDKQVYASLKTQFTPFTQVFKDLAAFKGN
EKKVTTTQDGYINVKADGGAIAGTFNMTITQLAQRHQIASNDIKDINAKLPKDETLKLGGKELKVTTDMTYKDLINKIND
GDYGVSAYTLGNKIFMTSKKEGTDGQIKFEGNTSTLFQDIGLANADGLALNTINEAQNAKYSINGIEAESFTNTIEALPG
VKIELLKVTEPKVEGTPDTGTTTDPKTKGVELKFTVSDSNVTDTANIIKKMVAEYNKAVSTVDLFAGKDGVFQGQVIMQS
VRQAMNNVATFSQDGNYLFTFGIQLKQDGTMEVNDEKLTQALKEKPDAAKQFFFSSNGLGKMMEEPLDKIFGDKGVVGER
VKNIDSRVSDLDKKIKDIETQNLQKQDEIVKKYQKLESTLAALDSQLKTIKAMTKQKSDD
>Mature_459_residues
AGTTMTGIGGRQQIWNLGNNMIDTSNLVELEMQALDMRKTPYTTEKQKLTEDKQVYASLKTQFTPFTQVFKDLAAFKGNE
KKVTTTQDGYINVKADGGAIAGTFNMTITQLAQRHQIASNDIKDINAKLPKDETLKLGGKELKVTTDMTYKDLINKINDG
DYGVSAYTLGNKIFMTSKKEGTDGQIKFEGNTSTLFQDIGLANADGLALNTINEAQNAKYSINGIEAESFTNTIEALPGV
KIELLKVTEPKVEGTPDTGTTTDPKTKGVELKFTVSDSNVTDTANIIKKMVAEYNKAVSTVDLFAGKDGVFQGQVIMQSV
RQAMNNVATFSQDGNYLFTFGIQLKQDGTMEVNDEKLTQALKEKPDAAKQFFFSSNGLGKMMEEPLDKIFGDKGVVGERV
KNIDSRVSDLDKKIKDIETQNLQKQDEIVKKYQKLESTLAALDSQLKTIKAMTKQKSDD

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481 [H]

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]

EC number: NA

Molecular weight: Translated: 50668; Mature: 50537

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGTTMTGIGGRQQIWNLGNNMIDTSNLVELEMQALDMRKTPYTTEKQKLTEDKQVYASL
CCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
KTQFTPFTQVFKDLAAFKGNEKKVTTTQDGYINVKADGGAIAGTFNMTITQLAQRHQIAS
HHCCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHC
NDIKDINAKLPKDETLKLGGKELKVTTDMTYKDLINKINDGDYGVSAYTLGNKIFMTSKK
CCHHHHHCCCCCCCCEECCCCEEEEEECCHHHHHHHHCCCCCCCEEEEEECCEEEEECCC
EGTDGQIKFEGNTSTLFQDIGLANADGLALNTINEAQNAKYSINGIEAESFTNTIEALPG
CCCCCEEEECCCCHHHHHHCCCCCCCCEEEECCHHHCCCEEEECCCCHHHHHHHHHHCCC
VKIELLKVTEPKVEGTPDTGTTTDPKTKGVELKFTVSDSNVTDTANIIKKMVAEYNKAVS
CEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
TVDLFAGKDGVFQGQVIMQSVRQAMNNVATFSQDGNYLFTFGIQLKQDGTMEVNDEKLTQ
HHHEECCCCCCCHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEECCCCEEECHHHHHH
ALKEKPDAAKQFFFSSNGLGKMMEEPLDKIFGDKGVVGERVKNIDSRVSDLDKKIKDIET
HHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QNLQKQDEIVKKYQKLESTLAALDSQLKTIKAMTKQKSDD
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AGTTMTGIGGRQQIWNLGNNMIDTSNLVELEMQALDMRKTPYTTEKQKLTEDKQVYASL
CCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
KTQFTPFTQVFKDLAAFKGNEKKVTTTQDGYINVKADGGAIAGTFNMTITQLAQRHQIAS
HHCCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHC
NDIKDINAKLPKDETLKLGGKELKVTTDMTYKDLINKINDGDYGVSAYTLGNKIFMTSKK
CCHHHHHCCCCCCCCEECCCCEEEEEECCHHHHHHHHCCCCCCCEEEEEECCEEEEECCC
EGTDGQIKFEGNTSTLFQDIGLANADGLALNTINEAQNAKYSINGIEAESFTNTIEALPG
CCCCCEEEECCCCHHHHHHCCCCCCCCEEEECCHHHCCCEEEECCCCHHHHHHHHHHCCC
VKIELLKVTEPKVEGTPDTGTTTDPKTKGVELKFTVSDSNVTDTANIIKKMVAEYNKAVS
CEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
TVDLFAGKDGVFQGQVIMQSVRQAMNNVATFSQDGNYLFTFGIQLKQDGTMEVNDEKLTQ
HHHEECCCCCCCHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEEECCCCEEECHHHHHH
ALKEKPDAAKQFFFSSNGLGKMMEEPLDKIFGDKGVVGERVKNIDSRVSDLDKKIKDIET
HHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QNLQKQDEIVKKYQKLESTLAALDSQLKTIKAMTKQKSDD
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9488388; 10678962 [H]