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The map label for this gene is licR [H]

Identifier: 218233646

GI number: 218233646

Start: 814752

End: 816692

Strand: Direct

Name: licR [H]

Synonym: BCB4264_A0843

Alternate gene names: 218233646

Gene position: 814752-816692 (Clockwise)

Preceding gene: 218234170

Following gene: 218235708

Centisome position: 15.03

GC content: 32.77

Gene sequence:

>1941_bases
ATGACAAAGGTGCATCAGCGATTAATTTCTATTTTAGAGGAGTTTTTAGAAGAGAAATCGATGTTAAATCGAGCTTTTTT
AGCGGGCCGTTTACATGTATCGACGAAGACGATTCAAAAGGATATAAAATTATTAAATGATATATTGGAAGAAAACGGAG
CGAAAATCGAATCGCAAAGAGGGACTGGGTACGAATTAGAAATTATACAAACGAAGAAATTTGAAGAATTTTGTGTGAGT
CTATTTCAAAAACAGACGGAAAAGATTCCAACTTCTTATGAAGAAAGAATAGCGTATATTCTGCAGCGTGTTTTAACGAC
AGAGGGATATGTGAAGCTTTCAGAATTAGCGGAAGAGATGTATGTGAGCAAATCAACGGTCAATTTAATTATGAAAGATG
TTACAGATATATGTGGTCGCTATGAATTACAAATTGAGAAGAGACCGTATTATGGTATACGTATTGTTGGAGAGGAATTT
AATATTCGTTCTTGTTTATCACAATATGGTTTACCGCGTTATGAGCATACTCCGTTTCATGAGCAATTTGAGCAGACGGA
GACATATTTATCGCTACCGCATATATCACTCATTCGTTCAATTATATTAAAGTATATTGAAGGCGGAACAATATATTTAT
CTGATATAGAAATTGATAATTTAGTCATTCATATTGCAATCGCATTAAAGCGTTGTCAAAGTCAACATTATATGAAAGGA
CTGCATGTGGAGCAATCAGAACTTATAATAAAGAAAGAATATACAATTGCGAAGCAAATTTTAGGAGATTTAGAGAAAGA
GTTAAAATTTTCATTTCCAGAAGAAGAAGTATTATATGTGACGATGCATTTATTAAGTACTGCTGTTACAACGAGAAATC
GCTATGAAAATGTAGAAGAGCTATTAGGAAAAGATATATATGCATTTATGCGACATATTCTTTTTAAAGTAGCGGAAGAA
CGGAATCTTATTTTTTATTATGATGAGGAATTATTATTTGGATTTGGTATTCATTTAAAAACGTTATTAAATCGTTTGAA
GTATAAGTTAAATACGAGAAATCCTCTTTTGGCAGAAGTGAAAAAGAATTATCCGTATGCTTTTGAAATTGCGGTTCTCG
TTGGAGATATCATTGGTGAATATACGGGTGAATCGATCCCTGAAAGTGAAATTGGTTATATTGCAATTCACTTCGGCGGA
GCTATGAGCCGTTTGCAGGAGCAAAATCAAAAGAAAAGATGCTTATTAGTTTGTGCGACTGGTCAAGGAAGTGCACAACT
ATTAAAATATAAAATTTTATCACAGTTCCGAGATAAATTAGAGATTGTAGGTATTACAGGCTATTATCAATTGAAAGTAG
AAGATCTTTATAAAGAAAAAATAGATTGTATTATTAGTACGATTCATATACCGAGTGGCTTGCCTGTTCCAGTTATAAAA
GTGAATTCAATATTTGATGATAAAGAGATTAAATCGATTGGTCAGCGGTTGTTTACGCATGTGAATACTAGTGTGCAGCC
TTATATTAAGGAAGATTTAATCTTTTTAAATCATAGTGCTTCTACGAAAGAGGATGTTATTCAGTTTTTATGTGAGAAAG
CTGCTGAGAAACGCTATGTACCAGAAAACTTTTATGCTTCTGTTATGGAAAGAGAAAATACGTCTCCGACAGCGGTTGGG
AATTCAGTTGCAATCCCGCATCCGATGCAGTTATTAAGTGAGGAAACTTTTTTGATGTTTTGCACACTTGAAAAGGCTGT
TGATTGGGGAGATAAAAAAGTACAAGTAATTATTTTATTTAGTGTAAAGCGCAATAATAATGAAGATTTGCAAAGGCTTT
ATGATTTTTTATATGATATTATGTCTAGTCAAACTACGATAGAGAAACTTACTCAGACCGAGGTAATTGAAGATTTTCAA
GAGATTTTATTATCATTTTGA

Upstream 100 bases:

>100_bases
TTCGGATTCACATTAAAGAAATAGAGAGAATATAAAGGGGAAAAACTACTGATTTCAGCAGCTTTTCCCCCTTTATATAT
AAAGAGCGAGAGGAAGAGCT

Downstream 100 bases:

>100_bases
AAAAGTATATAAAAACTTCCGTTACATAACGGAAGTTTTTTATGTTTAATTGTATGCGTTTTCATAATAAGATGAAAATA
TAGAAAACATATAGCTTGGG

Product: transcription antiterminator, BglG family

Products: NA

Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]

Number of amino acids: Translated: 646; Mature: 645

Protein sequence:

>646_residues
MTKVHQRLISILEEFLEEKSMLNRAFLAGRLHVSTKTIQKDIKLLNDILEENGAKIESQRGTGYELEIIQTKKFEEFCVS
LFQKQTEKIPTSYEERIAYILQRVLTTEGYVKLSELAEEMYVSKSTVNLIMKDVTDICGRYELQIEKRPYYGIRIVGEEF
NIRSCLSQYGLPRYEHTPFHEQFEQTETYLSLPHISLIRSIILKYIEGGTIYLSDIEIDNLVIHIAIALKRCQSQHYMKG
LHVEQSELIIKKEYTIAKQILGDLEKELKFSFPEEEVLYVTMHLLSTAVTTRNRYENVEELLGKDIYAFMRHILFKVAEE
RNLIFYYDEELLFGFGIHLKTLLNRLKYKLNTRNPLLAEVKKNYPYAFEIAVLVGDIIGEYTGESIPESEIGYIAIHFGG
AMSRLQEQNQKKRCLLVCATGQGSAQLLKYKILSQFRDKLEIVGITGYYQLKVEDLYKEKIDCIISTIHIPSGLPVPVIK
VNSIFDDKEIKSIGQRLFTHVNTSVQPYIKEDLIFLNHSASTKEDVIQFLCEKAAEKRYVPENFYASVMERENTSPTAVG
NSVAIPHPMQLLSEETFLMFCTLEKAVDWGDKKVQVIILFSVKRNNNEDLQRLYDFLYDIMSSQTTIEKLTQTEVIEDFQ
EILLSF

Sequences:

>Translated_646_residues
MTKVHQRLISILEEFLEEKSMLNRAFLAGRLHVSTKTIQKDIKLLNDILEENGAKIESQRGTGYELEIIQTKKFEEFCVS
LFQKQTEKIPTSYEERIAYILQRVLTTEGYVKLSELAEEMYVSKSTVNLIMKDVTDICGRYELQIEKRPYYGIRIVGEEF
NIRSCLSQYGLPRYEHTPFHEQFEQTETYLSLPHISLIRSIILKYIEGGTIYLSDIEIDNLVIHIAIALKRCQSQHYMKG
LHVEQSELIIKKEYTIAKQILGDLEKELKFSFPEEEVLYVTMHLLSTAVTTRNRYENVEELLGKDIYAFMRHILFKVAEE
RNLIFYYDEELLFGFGIHLKTLLNRLKYKLNTRNPLLAEVKKNYPYAFEIAVLVGDIIGEYTGESIPESEIGYIAIHFGG
AMSRLQEQNQKKRCLLVCATGQGSAQLLKYKILSQFRDKLEIVGITGYYQLKVEDLYKEKIDCIISTIHIPSGLPVPVIK
VNSIFDDKEIKSIGQRLFTHVNTSVQPYIKEDLIFLNHSASTKEDVIQFLCEKAAEKRYVPENFYASVMERENTSPTAVG
NSVAIPHPMQLLSEETFLMFCTLEKAVDWGDKKVQVIILFSVKRNNNEDLQRLYDFLYDIMSSQTTIEKLTQTEVIEDFQ
EILLSF
>Mature_645_residues
TKVHQRLISILEEFLEEKSMLNRAFLAGRLHVSTKTIQKDIKLLNDILEENGAKIESQRGTGYELEIIQTKKFEEFCVSL
FQKQTEKIPTSYEERIAYILQRVLTTEGYVKLSELAEEMYVSKSTVNLIMKDVTDICGRYELQIEKRPYYGIRIVGEEFN
IRSCLSQYGLPRYEHTPFHEQFEQTETYLSLPHISLIRSIILKYIEGGTIYLSDIEIDNLVIHIAIALKRCQSQHYMKGL
HVEQSELIIKKEYTIAKQILGDLEKELKFSFPEEEVLYVTMHLLSTAVTTRNRYENVEELLGKDIYAFMRHILFKVAEER
NLIFYYDEELLFGFGIHLKTLLNRLKYKLNTRNPLLAEVKKNYPYAFEIAVLVGDIIGEYTGESIPESEIGYIAIHFGGA
MSRLQEQNQKKRCLLVCATGQGSAQLLKYKILSQFRDKLEIVGITGYYQLKVEDLYKEKIDCIISTIHIPSGLPVPVIKV
NSIFDDKEIKSIGQRLFTHVNTSVQPYIKEDLIFLNHSASTKEDVIQFLCEKAAEKRYVPENFYASVMERENTSPTAVGN
SVAIPHPMQLLSEETFLMFCTLEKAVDWGDKKVQVIILFSVKRNNNEDLQRLYDFLYDIMSSQTTIEKLTQTEVIEDFQE
ILLSF

Specific function: Positive regulator of the licABCH operon [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1790027, Length=134, Percent_Identity=27.6119402985075, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR007737
- InterPro:   IPR011608
- InterPro:   IPR016152
- InterPro:   IPR002178
- InterPro:   IPR013011
- InterPro:   IPR003501
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 74929; Mature: 74797

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS51094 PTS_EIIA_TYPE_2 ; PS51099 PTS_EIIB_TYPE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVHQRLISILEEFLEEKSMLNRAFLAGRLHVSTKTIQKDIKLLNDILEENGAKIESQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHCCCCEEECCC
GTGYELEIIQTKKFEEFCVSLFQKQTEKIPTSYEERIAYILQRVLTTEGYVKLSELAEEM
CCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHH
YVSKSTVNLIMKDVTDICGRYELQIEKRPYYGIRIVGEEFNIRSCLSQYGLPRYEHTPFH
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCHH
EQFEQTETYLSLPHISLIRSIILKYIEGGTIYLSDIEIDNLVIHIAIALKRCQSQHYMKG
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
LHVEQSELIIKKEYTIAKQILGDLEKELKFSFPEEEVLYVTMHLLSTAVTTRNRYENVEE
CCCCHHHEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGKDIYAFMRHILFKVAEERNLIFYYDEELLFGFGIHLKTLLNRLKYKLNTRNPLLAEV
HHCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
KKNYPYAFEIAVLVGDIIGEYTGESIPESEIGYIAIHFGGAMSRLQEQNQKKRCLLVCAT
HCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCEEEEEEEC
GQGSAQLLKYKILSQFRDKLEIVGITGYYQLKVEDLYKEKIDCIISTIHIPSGLPVPVIK
CCCHHHHHHHHHHHHHHCCEEEEEECCEEEEEHHHHHHHHHHHHHHHEECCCCCCCCEEE
VNSIFDDKEIKSIGQRLFTHVNTSVQPYIKEDLIFLNHSASTKEDVIQFLCEKAAEKRYV
ECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCEEEEECCCCCHHHHHHHHHHHHHHCCCC
PENFYASVMERENTSPTAVGNSVAIPHPMQLLSEETFLMFCTLEKAVDWGDKKVQVIILF
CHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEHHHHHCCCCCEEEEEEEE
SVKRNNNEDLQRLYDFLYDIMSSQTTIEKLTQTEVIEDFQEILLSF
EECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKVHQRLISILEEFLEEKSMLNRAFLAGRLHVSTKTIQKDIKLLNDILEENGAKIESQR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHHCCCCEEECCC
GTGYELEIIQTKKFEEFCVSLFQKQTEKIPTSYEERIAYILQRVLTTEGYVKLSELAEEM
CCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHH
YVSKSTVNLIMKDVTDICGRYELQIEKRPYYGIRIVGEEFNIRSCLSQYGLPRYEHTPFH
HHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCHH
EQFEQTETYLSLPHISLIRSIILKYIEGGTIYLSDIEIDNLVIHIAIALKRCQSQHYMKG
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
LHVEQSELIIKKEYTIAKQILGDLEKELKFSFPEEEVLYVTMHLLSTAVTTRNRYENVEE
CCCCHHHEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGKDIYAFMRHILFKVAEERNLIFYYDEELLFGFGIHLKTLLNRLKYKLNTRNPLLAEV
HHCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
KKNYPYAFEIAVLVGDIIGEYTGESIPESEIGYIAIHFGGAMSRLQEQNQKKRCLLVCAT
HCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCEEEEEEEC
GQGSAQLLKYKILSQFRDKLEIVGITGYYQLKVEDLYKEKIDCIISTIHIPSGLPVPVIK
CCCHHHHHHHHHHHHHHCCEEEEEECCEEEEEHHHHHHHHHHHHHHHEECCCCCCCCEEE
VNSIFDDKEIKSIGQRLFTHVNTSVQPYIKEDLIFLNHSASTKEDVIQFLCEKAAEKRYV
ECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCEEEEECCCCCHHHHHHHHHHHHHHCCCC
PENFYASVMERENTSPTAVGNSVAIPHPMQLLSEETFLMFCTLEKAVDWGDKKVQVIILF
CHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEHHHHHCCCCCEEEEEEEE
SVKRNNNEDLQRLYDFLYDIMSSQTTIEKLTQTEVIEDFQEILLSF
EECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8990303; 8969509; 9384377; 10438772 [H]