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The map label for this gene is yhdI [H]

Identifier: 218233514

GI number: 218233514

Start: 601229

End: 602629

Strand: Direct

Name: yhdI [H]

Synonym: BCB4264_A0620

Alternate gene names: 218233514

Gene position: 601229-602629 (Clockwise)

Preceding gene: 218235748

Following gene: 218232229

Centisome position: 11.09

GC content: 35.12

Gene sequence:

>1401_bases
ATGTTAGAATTAACGCCTAATTTAAATATGAATAGTAAAAAGGCATTGTATGTGCAATTGTATGAGTATATAAAAAAAGA
AATTAAAGATGGATCGATTGTCCCTTTTACGAAATTACCGGCTAAGCGAAAGTTAGCGATACATTTACAAGTAAGTAAAA
ATACAGTAGAGGCAGCGTACGAACAATTACTTGCAGAAGGTTATATTGAGTCGATATCGAGAAAAGGTTATTTTGTATGC
AAGATTGAGCAAATGGTTCATATAGAGGATAGCGGAGAGAGAATAGAAGAAGTACTGTTTCAGGAGAAGAGTTATAAATT
TGACTTTACACAAACAGGAATTGATACAAATGCTTTTCCATTCAATATGTATCGGAAAATTGTAAATGAAATATGGCAGC
CGCATAATAACGAACTTCTCTTTCTAGGACACCCTCAAGGGGAAGCGAGCTTAAGAGAAGAGATTACGAATTATTTGTAT
GAATCTAGAGGTGTACGTTGTTCAGCTAGTCAAATTATATTAGGAGCGGGAACACAAATATTAGTGAAACTATTGTTTCA
ATTGTTAAAGGGAAGCAATTATGCAGTTGAAAACCCAGGGTATCATAGAAAGATGGTTGTTTTTGAAAAGGGGGAAGCAA
GAGTCCAAATGTTATCTTTAGATAGAGATGGAATTTGTATTGCAGATTTAGAAAATAGCAATGCGAATGTTGTATTTGTT
ACACCTTCCCATCAGTTTCCATATGGAATGATTATGCCTATTACGAGAAGGATGCAGCTTTTACAATGGGCAAAGAAAGA
AGAGAGCAGGTATATTATTGAAGATGATTACGATAGTGAATTTCGCTATTCTGGAAAGCCTATACCGGCGCTGCAAGGGT
TAGATACAGAGGGGAAAGTTATTTATATGGGGACGCTATCTAAAGCATTATTGCCATCGCTACGGATGAGCTATATGGTG
TTGCCGAAGAAATTAATTAAAAAGTATCAACAGCAATATTTATTTTATACACAAAGTGTTTCAAGAATGGACCAAGAAGT
GATTAGAAGATTTTTAAATGAAGGCTATTGGGAAAAACATATTCATAAAATGCGTGTCGTCTACCGAAAGAAGAGAGATC
GACTTGTTTTTGAAATAGAGAAGTATTTCTCTAATCGTGTTGAAGTGATAGGAGAAGATTCGGGATTACACATTTTATTA
AAAGTGCATAATGGAATGCGGGAAGAAGAATTAATTCAAGAAGCTGCGAAACATAGTATCAAAATATATCCTGTGTCTAC
GTACTATAAAGACGGTACGGCGCCTGAGAGTGTAGTTTTACTTGGGTTTGCGATATTATCAGAGGAAGAAATTGCGAAAG
CGATTCAATTATTACACACGGCATGGTTTACAAGAAAGTAA

Upstream 100 bases:

>100_bases
GTATTTGATTTTTTATGTGTGACATGATAAAAGGAATTATATATAACTTCTGGTACTGTAAAAAGTATCAGATTTTATTT
TTATTAAGGGGTCAGATATT

Downstream 100 bases:

>100_bases
AAAACATCCTCCAAACATGAGGATGTTTTTTATTATTTATTTTCATCTAAGAATAAGACCATATGCTCTTCGTCCCAATA
TTGTCCGTTATATTTTAATG

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGSIVPFTKLPAKRKLAIHLQVSKNTVEAAYEQLLAEGYIESISRKGYFVC
KIEQMVHIEDSGERIEEVLFQEKSYKFDFTQTGIDTNAFPFNMYRKIVNEIWQPHNNELLFLGHPQGEASLREEITNYLY
ESRGVRCSASQIILGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEKGEARVQMLSLDRDGICIADLENSNANVVFV
TPSHQFPYGMIMPITRRMQLLQWAKKEESRYIIEDDYDSEFRYSGKPIPALQGLDTEGKVIYMGTLSKALLPSLRMSYMV
LPKKLIKKYQQQYLFYTQSVSRMDQEVIRRFLNEGYWEKHIHKMRVVYRKKRDRLVFEIEKYFSNRVEVIGEDSGLHILL
KVHNGMREEELIQEAAKHSIKIYPVSTYYKDGTAPESVVLLGFAILSEEEIAKAIQLLHTAWFTRK

Sequences:

>Translated_466_residues
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGSIVPFTKLPAKRKLAIHLQVSKNTVEAAYEQLLAEGYIESISRKGYFVC
KIEQMVHIEDSGERIEEVLFQEKSYKFDFTQTGIDTNAFPFNMYRKIVNEIWQPHNNELLFLGHPQGEASLREEITNYLY
ESRGVRCSASQIILGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEKGEARVQMLSLDRDGICIADLENSNANVVFV
TPSHQFPYGMIMPITRRMQLLQWAKKEESRYIIEDDYDSEFRYSGKPIPALQGLDTEGKVIYMGTLSKALLPSLRMSYMV
LPKKLIKKYQQQYLFYTQSVSRMDQEVIRRFLNEGYWEKHIHKMRVVYRKKRDRLVFEIEKYFSNRVEVIGEDSGLHILL
KVHNGMREEELIQEAAKHSIKIYPVSTYYKDGTAPESVVLLGFAILSEEEIAKAIQLLHTAWFTRK
>Mature_466_residues
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGSIVPFTKLPAKRKLAIHLQVSKNTVEAAYEQLLAEGYIESISRKGYFVC
KIEQMVHIEDSGERIEEVLFQEKSYKFDFTQTGIDTNAFPFNMYRKIVNEIWQPHNNELLFLGHPQGEASLREEITNYLY
ESRGVRCSASQIILGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEKGEARVQMLSLDRDGICIADLENSNANVVFV
TPSHQFPYGMIMPITRRMQLLQWAKKEESRYIIEDDYDSEFRYSGKPIPALQGLDTEGKVIYMGTLSKALLPSLRMSYMV
LPKKLIKKYQQQYLFYTQSVSRMDQEVIRRFLNEGYWEKHIHKMRVVYRKKRDRLVFEIEKYFSNRVEVIGEDSGLHILL
KVHNGMREEELIQEAAKHSIKIYPVSTYYKDGTAPESVVLLGFAILSEEEIAKAIQLLHTAWFTRK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=308, Percent_Identity=22.4025974025974, Blast_Score=79, Evalue=8e-15,
Organism=Homo sapiens, GI33469970, Length=308, Percent_Identity=22.4025974025974, Blast_Score=79, Evalue=8e-15,
Organism=Escherichia coli, GI1787710, Length=434, Percent_Identity=24.6543778801843, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1790797, Length=437, Percent_Identity=22.1967963386728, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54240; Mature: 54240

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGSIVPFTKLPAKRKLAIHLQVSKNTVEAAY
CEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHH
EQLLAEGYIESISRKGYFVCKIEQMVHIEDSGERIEEVLFQEKSYKFDFTQTGIDTNAFP
HHHHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
FNMYRKIVNEIWQPHNNELLFLGHPQGEASLREEITNYLYESRGVRCSASQIILGAGTQI
HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCEEEEECCHHH
LVKLLFQLLKGSNYAVENPGYHRKMVVFEKGEARVQMLSLDRDGICIADLENSNANVVFV
HHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCEEEEE
TPSHQFPYGMIMPITRRMQLLQWAKKEESRYIIEDDYDSEFRYSGKPIPALQGLDTEGKV
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCE
IYMGTLSKALLPSLRMSYMVLPKKLIKKYQQQYLFYTQSVSRMDQEVIRRFLNEGYWEKH
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IHKMRVVYRKKRDRLVFEIEKYFSNRVEVIGEDSGLHILLKVHNGMREEELIQEAAKHSI
HHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCE
KIYPVSTYYKDGTAPESVVLLGFAILSEEEIAKAIQLLHTAWFTRK
EEEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLELTPNLNMNSKKALYVQLYEYIKKEIKDGSIVPFTKLPAKRKLAIHLQVSKNTVEAAY
CEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHH
EQLLAEGYIESISRKGYFVCKIEQMVHIEDSGERIEEVLFQEKSYKFDFTQTGIDTNAFP
HHHHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
FNMYRKIVNEIWQPHNNELLFLGHPQGEASLREEITNYLYESRGVRCSASQIILGAGTQI
HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCEEEEECCHHH
LVKLLFQLLKGSNYAVENPGYHRKMVVFEKGEARVQMLSLDRDGICIADLENSNANVVFV
HHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCEEEEE
TPSHQFPYGMIMPITRRMQLLQWAKKEESRYIIEDDYDSEFRYSGKPIPALQGLDTEGKV
ECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCE
IYMGTLSKALLPSLRMSYMVLPKKLIKKYQQQYLFYTQSVSRMDQEVIRRFLNEGYWEKH
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IHKMRVVYRKKRDRLVFEIEKYFSNRVEVIGEDSGLHILLKVHNGMREEELIQEAAKHSI
HHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCE
KIYPVSTYYKDGTAPESVVLLGFAILSEEEIAKAIQLLHTAWFTRK
EEEEEEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]