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The map label for this gene is dapL [H]

Identifier: 218233511

GI number: 218233511

Start: 3998778

End: 3999908

Strand: Reverse

Name: dapL [H]

Synonym: BCB4264_A4083

Alternate gene names: 218233511

Gene position: 3999908-3998778 (Counterclockwise)

Preceding gene: 218236139

Following gene: 218232270

Centisome position: 73.81

GC content: 36.6

Gene sequence:

>1131_bases
ATGACAGTAAGCAAATTTGTCCAAATTCGTAGAGATCTACATAGAATTCCAGAAATCGGATTTAAGGAATGGAAAACACA
ACAGTATATTTTAGATTATATAGGAACACTTTCTCATGAATTTGTGGAAGTGAAGACATGGAAAACGGGTGTAATCGTTA
AAGTAAATGGAAAAAATCCCGAAAAAATAATAGGTTATCGTGCAGATATAGACGGTTTACCAATTACAGAGGAAACTGGA
TACGAGTTTGCTTCTATTCACGAAGGAATGATGCATGCATGTGGCCATGATGTACATACAACAATCGGTTTAGGCCTTCT
AACGAAAGCTGTGAGCGAAAGAATAGATGATGACCTTGTATTTCTATTCCAGCCAGCAGAAGAAGGACCAGGCGGTGCTC
TTCCTATGTTAGAAAGTGAAGAGTTAAAAGAATGGAAACCGAATATAATTCTTGGTCTTCATATTGCACCAGAATACGCT
GTGGGGACAATTGCAACGAAAGAAGGACTGTTATTTGCCAATACTTCAGAATTATATATTGATTTAAAAGGGAAAGGTGG
CCATGCTGCCTATCCGCATACTGCAAATGACATGATTGTTGCAGCGAGTCATCTTGTTACACAGCTACAATCCGTTATTA
GTCGCAATGTAAATCCTCTTGATAGTGCAGTAATTACAATCGGGAAAATTACTGGTGGTACGGTTCAAAATATTATTGCA
GAAAAATCTCGTTTAGAAGGAACGATTCGAACATTATCAGTGGAATCAATGAAGCGTGTGAAAAGCAGAATTGAGTCAAT
TGTTGCAGGTATCGAAGCTTCTTTCCAGTGTGAGGCGATTATAGATTACGGAGCAATGTATCATCAAGTATATAACCATG
AAGAGTTAACGAGAGAGTTTATGGAATTTGTACATAAACAAACTGATATGAATGTTATTACATGTACTGAGGCAATGACG
GGTGAAGATTTTGGTTATATGCTTCGAGAAATCCCTGGATTTATGTTTTGGCTTGGAGTAAATTCAGAATATGGTTTACA
TCATGCAAAATTAAAACCAGACGAAGAAGTGATTGAAAAGGCAATTACATTTTTAAGCCAATATGTAAAGTGGAAAGGGA
ATAGAAAATAA

Upstream 100 bases:

>100_bases
TAAACAAGAGCTTCGTCAATTAAACCCAGAGAAATAAAAAGTAAAAAAAGCGTAAGAGCGTAAATGGGCTCTTACGCTTT
TTATAGATAGAGGTGCAAAA

Downstream 100 bases:

>100_bases
AACTTCCACTTTCTTGAAGGTTCCAAAAAACTTTTTGTTCTGAGGTGTAAGTAACGCTCGTATAGATTGATTTTAGACAT
TTATATACAAATGGAAGAAT

Product: peptidase, M20/M25/M40 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MTVSKFVQIRRDLHRIPEIGFKEWKTQQYILDYIGTLSHEFVEVKTWKTGVIVKVNGKNPEKIIGYRADIDGLPITEETG
YEFASIHEGMMHACGHDVHTTIGLGLLTKAVSERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYA
VGTIATKEGLLFANTSELYIDLKGKGGHAAYPHTANDMIVAASHLVTQLQSVISRNVNPLDSAVITIGKITGGTVQNIIA
EKSRLEGTIRTLSVESMKRVKSRIESIVAGIEASFQCEAIIDYGAMYHQVYNHEELTREFMEFVHKQTDMNVITCTEAMT
GEDFGYMLREIPGFMFWLGVNSEYGLHHAKLKPDEEVIEKAITFLSQYVKWKGNRK

Sequences:

>Translated_376_residues
MTVSKFVQIRRDLHRIPEIGFKEWKTQQYILDYIGTLSHEFVEVKTWKTGVIVKVNGKNPEKIIGYRADIDGLPITEETG
YEFASIHEGMMHACGHDVHTTIGLGLLTKAVSERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYA
VGTIATKEGLLFANTSELYIDLKGKGGHAAYPHTANDMIVAASHLVTQLQSVISRNVNPLDSAVITIGKITGGTVQNIIA
EKSRLEGTIRTLSVESMKRVKSRIESIVAGIEASFQCEAIIDYGAMYHQVYNHEELTREFMEFVHKQTDMNVITCTEAMT
GEDFGYMLREIPGFMFWLGVNSEYGLHHAKLKPDEEVIEKAITFLSQYVKWKGNRK
>Mature_375_residues
TVSKFVQIRRDLHRIPEIGFKEWKTQQYILDYIGTLSHEFVEVKTWKTGVIVKVNGKNPEKIIGYRADIDGLPITEETGY
EFASIHEGMMHACGHDVHTTIGLGLLTKAVSERIDDDLVFLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYAV
GTIATKEGLLFANTSELYIDLKGKGGHAAYPHTANDMIVAASHLVTQLQSVISRNVNPLDSAVITIGKITGGTVQNIIAE
KSRLEGTIRTLSVESMKRVKSRIESIVAGIEASFQCEAIIDYGAMYHQVYNHEELTREFMEFVHKQTDMNVITCTEAMTG
EDFGYMLREIPGFMFWLGVNSEYGLHHAKLKPDEEVIEKAITFLSQYVKWKGNRK

Specific function: Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate [H]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family. DapL subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081880, Length=314, Percent_Identity=24.8407643312102, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.47 [H]

Molecular weight: Translated: 42173; Mature: 42042

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSKFVQIRRDLHRIPEIGFKEWKTQQYILDYIGTLSHEFVEVKTWKTGVIVKVNGKNP
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEECCCCC
EKIIGYRADIDGLPITEETGYEFASIHEGMMHACGHDVHTTIGLGLLTKAVSERIDDDLV
HHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEE
FLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYAVGTIATKEGLLFANTSELYI
EEEECCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCHHEEEEEECCCEEEEECCEEEE
DLKGKGGHAAYPHTANDMIVAASHLVTQLQSVISRNVNPLDSAVITIGKITGGTVQNIIA
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCHHHHHHH
EKSRLEGTIRTLSVESMKRVKSRIESIVAGIEASFQCEAIIDYGAMYHQVYNHEELTREF
HHHHHCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCHHHHHHHH
MEFVHKQTDMNVITCTEAMTGEDFGYMLREIPGFMFWLGVNSEYGLHHAKLKPDEEVIEK
HHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCCEECCCCCHHHHHHH
AITFLSQYVKWKGNRK
HHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TVSKFVQIRRDLHRIPEIGFKEWKTQQYILDYIGTLSHEFVEVKTWKTGVIVKVNGKNP
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEECCCCC
EKIIGYRADIDGLPITEETGYEFASIHEGMMHACGHDVHTTIGLGLLTKAVSERIDDDLV
HHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEE
FLFQPAEEGPGGALPMLESEELKEWKPNIILGLHIAPEYAVGTIATKEGLLFANTSELYI
EEEECCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCHHEEEEEECCCEEEEECCEEEE
DLKGKGGHAAYPHTANDMIVAASHLVTQLQSVISRNVNPLDSAVITIGKITGGTVQNIIA
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCHHHHHHH
EKSRLEGTIRTLSVESMKRVKSRIESIVAGIEASFQCEAIIDYGAMYHQVYNHEELTREF
HHHHHCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCHHHHHHHH
MEFVHKQTDMNVITCTEAMTGEDFGYMLREIPGFMFWLGVNSEYGLHHAKLKPDEEVIEK
HHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCCEECCCCCHHHHHHH
AITFLSQYVKWKGNRK
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA