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The map label for this gene is ywqM [H]

Identifier: 218233493

GI number: 218233493

Start: 2291097

End: 2291963

Strand: Reverse

Name: ywqM [H]

Synonym: BCB4264_A2391

Alternate gene names: 218233493

Gene position: 2291963-2291097 (Counterclockwise)

Preceding gene: 218232677

Following gene: 218231164

Centisome position: 42.29

GC content: 34.37

Gene sequence:

>867_bases
ATGGAAATGAGACATGTTAAAACATTTTGCGCCATTGTGAAGTATGGTAATTTTTCTAAAGCTGCTCATGCGCTAGGTTA
TGCGCAATCTACTGTTACAGCACATATGAAAGCTTTAGAGAACGATTTACATATTCCACTTTTCGATCGGTTAGGGAAAA
AAGTGCTACTTACAAAAGCAGGTCATCAATTTCATCCTTATGCATTAGAATTACTTTCAATATATGAAAAAGCGCAAGAA
ATCCCCCAAAACACAGATTATTTAGAAGGTACATTAAGTATTACATCTAATGAATCATTAGCGGTATATCGATTACCACA
ATTATTACGTACTTACAAACAGAAAAATCAGAAAGTAAATATCATGCTTGAAACGAACACAAATGAACAAGCATTACAAA
AATTACGTGAAGGAGAAACAGACGCTGTCTTCATAATTGGAGAAAGTATAGAACATAATGATTTTATTACGCGTACTTTT
AGTAATGAAACATTTGGATGGATTTTACCAGCTTATTCCTCTGCGCATACAAATCCATTCCAGTTATTACAGGACACCCA
GTTCATTTTTACAGAACAAAGCTGCGGCTATAGGCCAATGGTAGATCGTTTTTTACGTCAAAGCGGGAATATTCCAGATA
AAACATTTGAAACTTCCAATGTTGAAGTCATTAAACAATCCGTTATGTGTGAGTTAGGCATTTCAATTCTTCCTTATATC
GTTGTACAAGAAAGTTGTCAAAAAGAACAACTATGTTTTCAGCCTATCGAAACTCCAACAGTTATTCAAAGTCATGTAAT
CTATCATAAATCTAGATGGATTTCCCCGGTGTTACAGTCGTTTCTTTCCTTACTTGAACGAGACTAA

Upstream 100 bases:

>100_bases
TATTTCTACAATTTCATTTTATACAGAATTTAATCATTTGGAAAATTAAAATACATGATATAATCATTCACAAATCATGA
TAATAAAAGAGGGATCGCTT

Downstream 100 bases:

>100_bases
AATATTAAGACGTACATATAAAAAGAGTAATTGCCTAATAAGCAATTACTCTCTTTCATTAATTAATATACTATTTATTA
GTCTGCCCCCCACCTGCAAT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MEMRHVKTFCAIVKYGNFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELLSIYEKAQE
IPQNTDYLEGTLSITSNESLAVYRLPQLLRTYKQKNQKVNIMLETNTNEQALQKLREGETDAVFIIGESIEHNDFITRTF
SNETFGWILPAYSSAHTNPFQLLQDTQFIFTEQSCGYRPMVDRFLRQSGNIPDKTFETSNVEVIKQSVMCELGISILPYI
VVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVLQSFLSLLERD

Sequences:

>Translated_288_residues
MEMRHVKTFCAIVKYGNFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELLSIYEKAQE
IPQNTDYLEGTLSITSNESLAVYRLPQLLRTYKQKNQKVNIMLETNTNEQALQKLREGETDAVFIIGESIEHNDFITRTF
SNETFGWILPAYSSAHTNPFQLLQDTQFIFTEQSCGYRPMVDRFLRQSGNIPDKTFETSNVEVIKQSVMCELGISILPYI
VVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVLQSFLSLLERD
>Mature_288_residues
MEMRHVKTFCAIVKYGNFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELLSIYEKAQE
IPQNTDYLEGTLSITSNESLAVYRLPQLLRTYKQKNQKVNIMLETNTNEQALQKLREGETDAVFIIGESIEHNDFITRTF
SNETFGWILPAYSSAHTNPFQLLQDTQFIFTEQSCGYRPMVDRFLRQSGNIPDKTFETSNVEVIKQSVMCELGISILPYI
VVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVLQSFLSLLERD

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=313, Percent_Identity=26.8370607028754, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788481, Length=283, Percent_Identity=26.8551236749117, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787806, Length=287, Percent_Identity=23.3449477351916, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788887, Length=291, Percent_Identity=25.085910652921, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=22.7586206896552, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790208, Length=293, Percent_Identity=24.2320819112628, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790399, Length=265, Percent_Identity=23.3962264150943, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=21.3058419243986, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=297, Percent_Identity=26.2626262626263, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI48994962, Length=243, Percent_Identity=27.1604938271605, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=26.1904761904762, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790783, Length=293, Percent_Identity=24.5733788395904, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33055; Mature: 33055

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMRHVKTFCAIVKYGNFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECC
GHQFHPYALELLSIYEKAQEIPQNTDYLEGTLSITSNESLAVYRLPQLLRTYKQKNQKVN
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEHHHHHHHHHHHHHCCCEEE
IMLETNTNEQALQKLREGETDAVFIIGESIEHNDFITRTFSNETFGWILPAYSSAHTNPF
EEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCHH
QLLQDTQFIFTEQSCGYRPMVDRFLRQSGNIPDKTFETSNVEVIKQSVMCELGISILPYI
HHHHCCHHEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVLQSFLSLLERD
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEMRHVKTFCAIVKYGNFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECC
GHQFHPYALELLSIYEKAQEIPQNTDYLEGTLSITSNESLAVYRLPQLLRTYKQKNQKVN
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEHHHHHHHHHHHHHCCCEEE
IMLETNTNEQALQKLREGETDAVFIIGESIEHNDFITRTFSNETFGWILPAYSSAHTNPF
EEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCCCCHH
QLLQDTQFIFTEQSCGYRPMVDRFLRQSGNIPDKTFETSNVEVIKQSVMCELGISILPYI
HHHHCCHHEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVLQSFLSLLERD
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]