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The map label for this gene is ygaV [C]

Identifier: 218233407

GI number: 218233407

Start: 3286328

End: 3286681

Strand: Reverse

Name: ygaV [C]

Synonym: BCB4264_A3406

Alternate gene names: 218233407

Gene position: 3286681-3286328 (Counterclockwise)

Preceding gene: 218232662

Following gene: 218234440

Centisome position: 60.65

GC content: 34.46

Gene sequence:

>354_bases
ATGGGAAACGAAATGCAACAATTTAAAGCAGATTTCTTTAAAGCCTTAGCACACCCTTTGCGAATAGGTATCTTAGAATT
ATTGTCAGAAGGTGAAAAAAGCGTAAACGAAATTCAAGATATTCTAAATAAGGAAGGTTCAGCTGTTTCTCAGCAATTAA
GTGTACTACGTTCAAAAAACATTGTTGTTGGTAGAAAAGATGGAAAAAGAGTTTTATATTCTTTACGAGACCCTATTATT
GTGGATTTATTGGTGGTTGCACGGAAGATTTTTAACAACCATTTAATCGATACGATTTCAATGTTAGAAGAGCTAGATGG
AGCAGAAAGTGAAATGATGGCTAAGGAGGGATAG

Upstream 100 bases:

>100_bases
TTGAAAATTCGAGGTTTTAAAAGTACTATATACATATTCAAACATTTGAAGATGTATATAGTACTTTTGAAAATTGAGGA
AAAGTAACGGAGGGTTTTCA

Downstream 100 bases:

>100_bases
GTTGAGTATTGAGGTTAAGAAAGAAGATATCATCCAACATGGGATTGAAACATTTCGCTCATTAGGAGCTCATTACGTTT
GTGAAGTTTGTATAAAAAGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MGNEMQQFKADFFKALAHPLRIGILELLSEGEKSVNEIQDILNKEGSAVSQQLSVLRSKNIVVGRKDGKRVLYSLRDPII
VDLLVVARKIFNNHLIDTISMLEELDGAESEMMAKEG

Sequences:

>Translated_117_residues
MGNEMQQFKADFFKALAHPLRIGILELLSEGEKSVNEIQDILNKEGSAVSQQLSVLRSKNIVVGRKDGKRVLYSLRDPII
VDLLVVARKIFNNHLIDTISMLEELDGAESEMMAKEG
>Mature_116_residues
GNEMQQFKADFFKALAHPLRIGILELLSEGEKSVNEIQDILNKEGSAVSQQLSVLRSKNIVVGRKDGKRVLYSLRDPIIV
DLLVVARKIFNNHLIDTISMLEELDGAESEMMAKEG

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 13096; Mature: 12965

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNEMQQFKADFFKALAHPLRIGILELLSEGEKSVNEIQDILNKEGSAVSQQLSVLRSKN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
IVVGRKDGKRVLYSLRDPIIVDLLVVARKIFNNHLIDTISMLEELDGAESEMMAKEG
CEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure 
GNEMQQFKADFFKALAHPLRIGILELLSEGEKSVNEIQDILNKEGSAVSQQLSVLRSKN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
IVVGRKDGKRVLYSLRDPIIVDLLVVARKIFNNHLIDTISMLEELDGAESEMMAKEG
CEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]