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The map label for this gene is pepF [H]

Identifier: 218232215

GI number: 218232215

Start: 1346659

End: 1348353

Strand: Direct

Name: pepF [H]

Synonym: BCB4264_A1389

Alternate gene names: 218232215

Gene position: 1346659-1348353 (Clockwise)

Preceding gene: 218234161

Following gene: 218231791

Centisome position: 24.85

GC content: 35.46

Gene sequence:

>1695_bases
ATGTCATTTAAAGACTATGAATATAAACGCCCAAATATTGAAGAGTTAAAAGAGAAATTTACTGTTGCTTTAGAGAAGTT
TGATAACGCAAAAACTGTAGAAGAACAAAAACAAGTCATTCATTCAATTAATGAGATTCGCAACGATTTTGGTACAATGG
GAAACCTTTGTTACATTCGCCATTCTGTTGATACGACGGATACTTTTTATAAGGAGGAGCAGGATTTCTTTGATGAATTC
TCTCCAGTTGTACAAGGATATGGTACAAAATATTATAAGGCACTCATTAATTCTCCATTTCGTGAAGAATTAGAGGCGTA
TTATGGAAAACAATTATTTGCTCTAGCAGAATGTGATTTAAAAACATATTCAGATGAAGTCGTGAAAGATTTACAATTAG
AAAATAAATTATCATCGCAATATACACAGTTATTAGCATCTGCAAAAATTGACTTTGCTGGAGAAGAAAGAACGTTATCG
CAACTGATTCCGTTTATGCAAGGAAAAGAAAGAAGCGAACGTAAAGCAGCAAGTGAAGCATACTACGGATTTTTAGCTGG
AAATGAGGAAGAACTAGATCGTATTTATGATGAGCTTGTTAAAGTGAGAACGAAAATCGCAAAATCTTTAGGTTTCAAAA
ACTTTGTTGAACTTGGATATGCAAGAATGTACCGTACAGATTATAATGCGGAGATGGTGGCTAATTACCGTCAGCAAGTG
CTAGATTATATCGTTCCCGTTACAACGGAATTAAGAAAGCGACAACAAGCACGTATCGGTGTAGAGAAGTTAGCTTATTA
CGACGAAAACTTTGAGTTTGCTACAGGTAACCCAACTCCCAAAGGAGATGCGGATTGGATTGTTGATCATGGAAAGACAA
TGTATAAAGAGTTATCGGCTGAAACAGATGAATTTTTCAATTTCATGCTAGATAATGATTTATTAGATTTAGTTGCGAAA
AAAGGAAAAGCTGGTGGCGGATATTGTACATATATTGAGAATTATAAAGCGCCATTTATTTTCTCAAACTTCAATGGAAC
ATCTGGTGACATTGATGTATTAACACATGAAGCAGGTCATGCCTTCCAAGTATATGAAAGTCGTAAATTTGAAATTCCAG
AATATAATTGGCCAACATATGAGGCGTGTGAAATCCACTCTATGAGTATGGAATTCTTTACATGGCCATGGATGAAGCTA
TTCTTTGAAGAAGATGCAGATAAATATTACTTCTCTCACTTAAGTTCAGCACTTCTGTTTTTACCTTATGGTGTATCTGT
TGATGAATATCAACATTATGTATATGAAAATCCTGAAGCATCACCTGAAGAGCGTAAGACAGCATGGCGTAACATAGAGA
AGAAATATTTACCACATCGTGATTATGAGGAGAATGATTATTTAGAGCGCGGTGGTTTTTGGCAACGTCAAGGGCATATT
TATAGCTCACCGTTCTATTATATTGATTACACGCTTGCTCAAATTTGTGCGCTACAATTTTGGAAACGTGCAAGAGATAA
TAGACAAGAGGCGTGGGAAGATTATGTGAATCTGTGCCAACAAGGTGGAAGTAAATCGTTCTTAGAATTAGTAGAGGTTG
CAAATTTAACATCACCATTTGCTGAAGGCTGTGTGAAAAGTGTTATTACAGAAATTGAAGCATGGTTACATGCGATTGAC
GACACAAAATTGTAA

Upstream 100 bases:

>100_bases
CTCAGGGCAGTCACTGCCGAAATTTGTTGAAAATTAAGAGGGAATTCAAGAATACGTATTGAATTATAATAAAGGTATGT
AATGGAGAGGAGGCTCGTTC

Downstream 100 bases:

>100_bases
AAAACATGCGCTTTTTTCACATGTTTAACATCGACATAATGGGAAAATGATGAGATAATAAAAGAAAATTCAGAATACTG
AAGGGGTGTTTCTAATAAGG

Product: putative oligoendopeptidase F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 563

Protein sequence:

>564_residues
MSFKDYEYKRPNIEELKEKFTVALEKFDNAKTVEEQKQVIHSINEIRNDFGTMGNLCYIRHSVDTTDTFYKEEQDFFDEF
SPVVQGYGTKYYKALINSPFREELEAYYGKQLFALAECDLKTYSDEVVKDLQLENKLSSQYTQLLASAKIDFAGEERTLS
QLIPFMQGKERSERKAASEAYYGFLAGNEEELDRIYDELVKVRTKIAKSLGFKNFVELGYARMYRTDYNAEMVANYRQQV
LDYIVPVTTELRKRQQARIGVEKLAYYDENFEFATGNPTPKGDADWIVDHGKTMYKELSAETDEFFNFMLDNDLLDLVAK
KGKAGGGYCTYIENYKAPFIFSNFNGTSGDIDVLTHEAGHAFQVYESRKFEIPEYNWPTYEACEIHSMSMEFFTWPWMKL
FFEEDADKYYFSHLSSALLFLPYGVSVDEYQHYVYENPEASPEERKTAWRNIEKKYLPHRDYEENDYLERGGFWQRQGHI
YSSPFYYIDYTLAQICALQFWKRARDNRQEAWEDYVNLCQQGGSKSFLELVEVANLTSPFAEGCVKSVITEIEAWLHAID
DTKL

Sequences:

>Translated_564_residues
MSFKDYEYKRPNIEELKEKFTVALEKFDNAKTVEEQKQVIHSINEIRNDFGTMGNLCYIRHSVDTTDTFYKEEQDFFDEF
SPVVQGYGTKYYKALINSPFREELEAYYGKQLFALAECDLKTYSDEVVKDLQLENKLSSQYTQLLASAKIDFAGEERTLS
QLIPFMQGKERSERKAASEAYYGFLAGNEEELDRIYDELVKVRTKIAKSLGFKNFVELGYARMYRTDYNAEMVANYRQQV
LDYIVPVTTELRKRQQARIGVEKLAYYDENFEFATGNPTPKGDADWIVDHGKTMYKELSAETDEFFNFMLDNDLLDLVAK
KGKAGGGYCTYIENYKAPFIFSNFNGTSGDIDVLTHEAGHAFQVYESRKFEIPEYNWPTYEACEIHSMSMEFFTWPWMKL
FFEEDADKYYFSHLSSALLFLPYGVSVDEYQHYVYENPEASPEERKTAWRNIEKKYLPHRDYEENDYLERGGFWQRQGHI
YSSPFYYIDYTLAQICALQFWKRARDNRQEAWEDYVNLCQQGGSKSFLELVEVANLTSPFAEGCVKSVITEIEAWLHAID
DTKL
>Mature_563_residues
SFKDYEYKRPNIEELKEKFTVALEKFDNAKTVEEQKQVIHSINEIRNDFGTMGNLCYIRHSVDTTDTFYKEEQDFFDEFS
PVVQGYGTKYYKALINSPFREELEAYYGKQLFALAECDLKTYSDEVVKDLQLENKLSSQYTQLLASAKIDFAGEERTLSQ
LIPFMQGKERSERKAASEAYYGFLAGNEEELDRIYDELVKVRTKIAKSLGFKNFVELGYARMYRTDYNAEMVANYRQQVL
DYIVPVTTELRKRQQARIGVEKLAYYDENFEFATGNPTPKGDADWIVDHGKTMYKELSAETDEFFNFMLDNDLLDLVAKK
GKAGGGYCTYIENYKAPFIFSNFNGTSGDIDVLTHEAGHAFQVYESRKFEIPEYNWPTYEACEIHSMSMEFFTWPWMKLF
FEEDADKYYFSHLSSALLFLPYGVSVDEYQHYVYENPEASPEERKTAWRNIEKKYLPHRDYEENDYLERGGFWQRQGHIY
SSPFYYIDYTLAQICALQFWKRARDNRQEAWEDYVNLCQQGGSKSFLELVEVANLTSPFAEGCVKSVITEIEAWLHAIDD
TKL

Specific function: Unknown

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 66143; Mature: 66012

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFKDYEYKRPNIEELKEKFTVALEKFDNAKTVEEQKQVIHSINEIRNDFGTMGNLCYIR
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
HSVDTTDTFYKEEQDFFDEFSPVVQGYGTKYYKALINSPFREELEAYYGKQLFALAECDL
ECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHH
KTYSDEVVKDLQLENKLSSQYTQLLASAKIDFAGEERTLSQLIPFMQGKERSERKAASEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
YYGFLAGNEEELDRIYDELVKVRTKIAKSLGFKNFVELGYARMYRTDYNAEMVANYRQQV
HHHEECCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LDYIVPVTTELRKRQQARIGVEKLAYYDENFEFATGNPTPKGDADWIVDHGKTMYKELSA
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHCCHHHHHHHHC
ETDEFFNFMLDNDLLDLVAKKGKAGGGYCTYIENYKAPFIFSNFNGTSGDIDVLTHEAGH
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCCCCCCCEEEEEECCCC
AFQVYESRKFEIPEYNWPTYEACEIHSMSMEFFTWPWMKLFFEEDADKYYFSHLSSALLF
EEEECCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LPYGVSVDEYQHYVYENPEASPEERKTAWRNIEKKYLPHRDYEENDYLERGGFWQRQGHI
HCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCE
YSSPFYYIDYTLAQICALQFWKRARDNRQEAWEDYVNLCQQGGSKSFLELVEVANLTSPF
ECCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
AEGCVKSVITEIEAWLHAIDDTKL
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SFKDYEYKRPNIEELKEKFTVALEKFDNAKTVEEQKQVIHSINEIRNDFGTMGNLCYIR
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
HSVDTTDTFYKEEQDFFDEFSPVVQGYGTKYYKALINSPFREELEAYYGKQLFALAECDL
ECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHH
KTYSDEVVKDLQLENKLSSQYTQLLASAKIDFAGEERTLSQLIPFMQGKERSERKAASEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
YYGFLAGNEEELDRIYDELVKVRTKIAKSLGFKNFVELGYARMYRTDYNAEMVANYRQQV
HHHEECCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LDYIVPVTTELRKRQQARIGVEKLAYYDENFEFATGNPTPKGDADWIVDHGKTMYKELSA
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHCCHHHHHHHHC
ETDEFFNFMLDNDLLDLVAKKGKAGGGYCTYIENYKAPFIFSNFNGTSGDIDVLTHEAGH
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCCCCCCCEEEEEECCCC
AFQVYESRKFEIPEYNWPTYEACEIHSMSMEFFTWPWMKLFFEEDADKYYFSHLSSALLF
EEEECCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LPYGVSVDEYQHYVYENPEASPEERKTAWRNIEKKYLPHRDYEENDYLERGGFWQRQGHI
HCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCE
YSSPFYYIDYTLAQICALQFWKRARDNRQEAWEDYVNLCQQGGSKSFLELVEVANLTSPF
ECCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHH
AEGCVKSVITEIEAWLHAIDDTKL
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]