Click here to switch to the map view.

The map label for this gene is fecI [C]

Identifier: 218232155

GI number: 218232155

Start: 672644

End: 673201

Strand: Direct

Name: fecI [C]

Synonym: BCB4264_A0682

Alternate gene names: 218232155

Gene position: 672644-673201 (Clockwise)

Preceding gene: 218235334

Following gene: 218234714

Centisome position: 12.41

GC content: 34.77

Gene sequence:

>558_bases
ATGAAAGTTACAAACAACGATTATGAAAAGATGGAAGAGCTATATGAGTTGTATGAACAAAAGATTTATTATGTAGCGTA
TTCTATTTTAAATAATATTCAACAGGCTGAAGATGCGGTTCAAGAGACGTTTATTACTCTTTATAAGAACTTGGAAAAGC
TCCATAGCTTGGCTACTCAAGAGCTTAAACGCTACATTTTGAGGGTCGCGAAAAACAAGGCGATTGATAGTTACCGGAAA
AACAAACGACATGAAACATTTTTAGAAGAATACGAAAGAGAATCAACAGAAGCAGTAGATGAAAATATTGAAGAGTGGGA
AAAACGTGTAATGTCCGAGGTTCAAATTGATGCATTGTTAAAAGAGTTAAATGAGTCTAATAGACAGGTGTTTAAGTACA
AAGTCTTCTATAACTTAACGTATCAAGAAATTTCAAGTGTCATGGGGATAAACGAGGCCAATGTCCGCAAGCAGTTTGAG
CGTGCTCGAAAACGAGTCCAAAATATGATAGGAGGTATAAAACATGACGAATTCAAAGAACTCCAAAGAAATATATGA

Upstream 100 bases:

>100_bases
GCTTTTGTTTATTCTATTATTAAATTTTATACATAAAAAGATTTTGCAGTGTCACAAAGTATAGCGCTTATTCGTTATAT
AGAGTGAGAGGAGGAATTAT

Downstream 100 bases:

>100_bases
ACTTGCTGAAAAAATTGCTTTAGATGATTTTGATAAACTCAAAGAACAACATGAATTTTCACATACATATACGCGCAAAA
AGAAGTTGTTTATGGAGGAA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigJ

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKVTNNDYEKMEELYELYEQKIYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLATQELKRYILRVAKNKAIDSYRK
NKRHETFLEEYERESTEAVDENIEEWEKRVMSEVQIDALLKELNESNRQVFKYKVFYNLTYQEISSVMGINEANVRKQFE
RARKRVQNMIGGIKHDEFKELQRNI

Sequences:

>Translated_185_residues
MKVTNNDYEKMEELYELYEQKIYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLATQELKRYILRVAKNKAIDSYRK
NKRHETFLEEYERESTEAVDENIEEWEKRVMSEVQIDALLKELNESNRQVFKYKVFYNLTYQEISSVMGINEANVRKQFE
RARKRVQNMIGGIKHDEFKELQRNI
>Mature_185_residues
MKVTNNDYEKMEELYELYEQKIYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLATQELKRYILRVAKNKAIDSYRK
NKRHETFLEEYERESTEAVDENIEEWEKRVMSEVQIDALLKELNESNRQVFKYKVFYNLTYQEISSVMGINEANVRKQFE
RARKRVQNMIGGIKHDEFKELQRNI

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22400; Mature: 22400

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTNNDYEKMEELYELYEQKIYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLATQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELKRYILRVAKNKAIDSYRKNKRHETFLEEYERESTEAVDENIEEWEKRVMSEVQIDALL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELNESNRQVFKYKVFYNLTYQEISSVMGINEANVRKQFERARKRVQNMIGGIKHDEFKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LQRNI
HHHCC
>Mature Secondary Structure
MKVTNNDYEKMEELYELYEQKIYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHSLATQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELKRYILRVAKNKAIDSYRKNKRHETFLEEYERESTEAVDENIEEWEKRVMSEVQIDALL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELNESNRQVFKYKVFYNLTYQEISSVMGINEANVRKQFERARKRVQNMIGGIKHDEFKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LQRNI
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA