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The map label for this gene is dapB [H]

Identifier: 218231991

GI number: 218231991

Start: 1514540

End: 1515340

Strand: Direct

Name: dapB [H]

Synonym: BCB4264_A1588

Alternate gene names: 218231991

Gene position: 1514540-1515340 (Clockwise)

Preceding gene: 218230894

Following gene: 218230774

Centisome position: 27.95

GC content: 38.83

Gene sequence:

>801_bases
ATGAAAGAAATTAAAGTAATTATCGCCGGACCAAGAGGACGTATGGGACATGAAGCAGTCCTTCTTATGGAAAGAACGGA
ACATTTTAATTTAGTAGCAGCAGTGGATTATAAGCATGGTGGTGAGAAGATTTCTGATTTACCTGGCATGCCAGCATTAC
ATGCGCCGATTTACGCTGATTTACATACTTGTTTAGATGAAGTAGAAGCAGATGTGTTGTTAGATTTAACAACACCAGAA
GTGGGGAAACAACACGTTACACTTGCAGTTGAGCGTGGACTTCGTTCGGTTATTGGTACAACTGGATTTACAGAAGAAGA
ATTGGCACGTTTAACAGAGAATGCAAAAGAAAAAGCAGTAGGAACAATTATTGCTCCAAACTTTGCAATTGGTGCAGTTC
TTATGATGAAATTCTCACAAATGGCAGCGAAATATTTCCAAGATGTTGAGGTAATTGAATTACATCATGATCAAAAATTA
GACGCACCATCTGGTACAGCTGTAAAAACGGTAGAGTTAATTCGTCAAAATCGTGAATCAAAGCAGCAAGGGCATCCAAA
TGAAGTAGAGCAACTAGCAGGTGCACGAGGTGCAAATGTAGACGGTATTCACATTCATAGTGTACGTTTGCCAGGGCTTA
TTGCACACCAAGAAGTAATGTTCGGTGGAGATGGACAAATGTTAACAGTTCGTCATGATTCATTCAATCGTGCATCATTT
ATGTCAGGTGTAAAACTATCAATTGAGACAGTAATGAACCTTGATCATCTTGTGTACGGTTTAGAAAATATTATCGACTA
A

Upstream 100 bases:

>100_bases
TAAATATTGATTTAGAGACAGCACATAACATTGTAATGAATAAATTTAATACACGTGATAAAGATCGCTGGACACGTATT
GATGAGGGAGAGAAAGAATA

Downstream 100 bases:

>100_bases
AGGGGAGACAACGGATGAAAATTGCCTTAATCGCACATGACAAAAAGAAAAATGATATGGTTTCGTTTGCATACGCATAT
AAACCAATTTTTGAACAACA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALHAPIYADLHTCLDEVEADVLLDLTTPE
VGKQHVTLAVERGLRSVIGTTGFTEEELARLTENAKEKAVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKL
DAPSGTAVKTVELIRQNRESKQQGHPNEVEQLAGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIID

Sequences:

>Translated_266_residues
MKEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALHAPIYADLHTCLDEVEADVLLDLTTPE
VGKQHVTLAVERGLRSVIGTTGFTEEELARLTENAKEKAVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKL
DAPSGTAVKTVELIRQNRESKQQGHPNEVEQLAGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIID
>Mature_266_residues
MKEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALHAPIYADLHTCLDEVEADVLLDLTTPE
VGKQHVTLAVERGLRSVIGTTGFTEEELARLTENAKEKAVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKL
DAPSGTAVKTVELIRQNRESKQQGHPNEVEQLAGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIID

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=270, Percent_Identity=28.5185185185185, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29168; Mature: 29168

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALHAPIYAD
CCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCHHHCCCCCCCHHCHHHHH
LHTCLDEVEADVLLDLTTPEVGKQHVTLAVERGLRSVIGTTGFTEEELARLTENAKEKAV
HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKLDAPSGTAVKTVELIRQNRES
EEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
KQQGHPNEVEQLAGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
HHCCCCHHHHHHHCCCCCCCCCEEEEEEECCCEEECCEEEECCCCCEEEEECCCCCHHHH
MSGVKLSIETVMNLDHLVYGLENIID
HCCCEEHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALHAPIYAD
CCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCHHHCCCCCCCHHCHHHHH
LHTCLDEVEADVLLDLTTPEVGKQHVTLAVERGLRSVIGTTGFTEEELARLTENAKEKAV
HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKLDAPSGTAVKTVELIRQNRES
EEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
KQQGHPNEVEQLAGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
HHCCCCHHHHHHHCCCCCCCCCEEEEEEECCCEEECCEEEECCCCCEEEEECCCCCHHHH
MSGVKLSIETVMNLDHLVYGLENIID
HCCCEEHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA