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The map label for this gene is algU [H]

Identifier: 218231966

GI number: 218231966

Start: 1045314

End: 1045847

Strand: Direct

Name: algU [H]

Synonym: BCB4264_A1071

Alternate gene names: 218231966

Gene position: 1045314-1045847 (Clockwise)

Preceding gene: 218234339

Following gene: 218232231

Centisome position: 19.29

GC content: 33.9

Gene sequence:

>534_bases
GTGGATGAATTAACGATAGAAGCGTTTGAAATAGAAGATAAGGAGGACCTTATCGACGAAATAATGAACAAGTATGGACA
AGAAGTCCTGCAGCTTGTGTATTCGTATGTGAATAATAAAGAGGTTGCGGAGGATGTAACGCAAGATATATTTGTGAAAT
GCTATAAATCTCTTCATACATATAAAGGGAAATCGAATGTGAAAACGTGGTTATGGAGAATTGCGATCAATCAATGTAAG
GACTATATAAAAAGTTGGTATAACAAAAAAGTTATCGTTACAGAGGGTGACTTTACGTATATGGAGAGTCAAAAAGAAAG
TGTCGAACAAACTGTTATTCAAAATGCAGAGGATAGTAGGCTTGCTTCTGCGGTAATGAGTTTACCGATAAAATATCGAG
AAGTCATTTATCTATTTTATTATGAAGAATTATCAATTAAAGAGATTGCTATGGTAATAGACGTAAAGGAAAATACGATA
AAAACGAGACTGAAAAAAGCGAAGGAACTTTTGAAGGAAGGATTGGAGGAATAA

Upstream 100 bases:

>100_bases
ATAAAAAAACGGTATGGACATTACCATCCGTATTTTTTTATGTATTTATAAAACTTTTCCATACAGTGCGTCGTCTAATA
TATGGGAAGGAGGAAATGAT

Downstream 100 bases:

>100_bases
TCAAATGGAAGATCGATTAAAAGGCTTGCGAAAATCAATGGAGAACACAACGTTTAAACATTTGAGTTTTTCTGATCAAC
ACCAGAAGCAGGTGCGCGAA

Product: RNA polymerase factor sigma C

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MDELTIEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGKSNVKTWLWRIAINQCK
DYIKSWYNKKVIVTEGDFTYMESQKESVEQTVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIAMVIDVKENTI
KTRLKKAKELLKEGLEE

Sequences:

>Translated_177_residues
MDELTIEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGKSNVKTWLWRIAINQCK
DYIKSWYNKKVIVTEGDFTYMESQKESVEQTVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIAMVIDVKENTI
KTRLKKAKELLKEGLEE
>Mature_177_residues
MDELTIEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGKSNVKTWLWRIAINQCK
DYIKSWYNKKVIVTEGDFTYMESQKESVEQTVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIAMVIDVKENTI
KTRLKKAKELLKEGLEE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=156, Percent_Identity=30.1282051282051, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20926; Mature: 20926

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELTIEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHT
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YKGKSNVKTWLWRIAINQCKDYIKSWYNKKVIVTEGDFTYMESQKESVEQTVIQNAEDSR
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHH
LASAVMSLPIKYREVIYLFYYEELSIKEIAMVIDVKENTIKTRLKKAKELLKEGLEE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDELTIEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHT
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YKGKSNVKTWLWRIAINQCKDYIKSWYNKKVIVTEGDFTYMESQKESVEQTVIQNAEDSR
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHH
LASAVMSLPIKYREVIYLFYYEELSIKEIAMVIDVKENTIKTRLKKAKELLKEGLEE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]