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The map label for this gene is yocH [H]

Identifier: 218231912

GI number: 218231912

Start: 2841618

End: 2843207

Strand: Reverse

Name: yocH [H]

Synonym: BCB4264_A2968

Alternate gene names: 218231912

Gene position: 2843207-2841618 (Counterclockwise)

Preceding gene: 218233034

Following gene: 218231673

Centisome position: 52.47

GC content: 35.35

Gene sequence:

>1590_bases
ATGAAAAAAGTAATTGGCGCAGCAACAGCAACTGTTTTTGGATTGGGAGCGTTTACCACAACTGCTACCGCAGAAACAAT
CGTAACAGCAGATGTACTTAACGTACGTGAAAAACCGACTACAGAATCAAAAGTGGTCGAAAAAGTAAAGAATGGTCAAG
AATTAAAAGTCATAAATACCGAAGATGGCTGGTCAAAAATTGAGTTGAATGGTAAAGAAGTGTTTGTAAGTTCGGAGTTT
ACAAAAGATGTATATCATGTAACGGCGAATTTGTTAAATGTACGTACTGAAGCAAACACAGATTCAGAAATTCTTGGCAG
ACTAAAAAAAGATGATGTAATTGAATCAACGCATCAAGTAAAAGACGGATGGTTGCAATTTGAGTATAAAGGAAAAACTG
CTTATGCAAACGTTTCTTTCCTATCAAGTACAGCACCAACTGAAAAGAAAACTGAAGAGAAAACGAAGCAAGTAGCGAAA
GTACAAAAATCAGTTAAAGAAAAGAAAGAAGTAAAGACGCAGAAAGTAGCAAAAGCGAAAGAAACAACGAAAGCACAAGA
AATAGTAAAGCCTAAAGAAGAGGCAAAAGTAGTAAAAGTTAAAGAAGAAGGGAAAGCGCAAGAAATAGTAAAACCTAAAG
AAGAAGGGAAAGCGCAAGAAATAGTAAAACCTAAAGAAGAGGCAAAAGTCAAAGAAGAAGTAAAAGTTAAAGAAGAAGAA
AAAGCGCAAGAAATAGTAAAGCCTAAAGAAGAGGCAAAAATCAAAGAAGAAGTAAAAGTTAAAGAAGAAGAGAAAGTGCA
AGAAATAGCAAAGGCTAAAGAAGAAGAAAAAGCAAAAGCTAAAGAAGAAGAGAAAGCAAGAGAAATAGTAAAAGCTAAAG
AAGAAGAGAAAGCAAGAGAAATAGCAAAAGCTAAAGAAGAAGAGAAAGCAAGAGAAATAGCAAAAGCTAAAGAAGAAGAG
AAAGCAAGAGAAATAGCAAAAGCTAAAGAAGAAGAGAAAGCAAGAGAAATAGCAAAAGCTAAAGAAGAAGAGAAAGCAAG
AGAAATAGCAAAAGCTAAAGAAGAAGAGAAAGCAAGAGAAATAGCAAAAGCTAAAGAAGAAGAGAAAGCAAGAGAAATAG
CAAAAGCTAAAGAAGAAGAGAAAGCAAGAGAAATAGCAAAAGCTAAAGAAGAAGAGAAAGCAAGAGAAATAGCAAAAGCT
AAAGAAGAAGAGAGAGCAAGAGAAATAGCAAAGGCTAAAGAAGAAGAGAGAGCGAAAGAAGCATCTAAAAACAACATACA
GTCTGCTAAACGTGAATTAACGGTAGTAGCGACAGCGTATACTGCTGATCCAAGTGAAAATGGTACATATGGTGGACGCG
TTTTAACTGCGATGGGGCATGATTTAACGGCAAATCCGAATATGAGAATTATCGCAGTTGACCCGAAAGTAATCCCATTA
GGATCTAAAGTATGGGTAGAAGGCTATGGAGAAGCGATCGCTGGTGATACTGGAAGTGCAATTAAAGGTAATCGTATTGA
TGTTTTAATGGGTTCAAAAAGTAAAGCTATGAATTGGGGAAGACAAACTGTTAAAGTGAAAATTTTATAA

Upstream 100 bases:

>100_bases
CAATATTAATATACTGTTGCAAATGTTTTGATATTATGTAAAATTATACAATTTTACGGAGGCATTTGATAAAATTCAAA
AAAATTTAATGGAGGCTAAT

Downstream 100 bases:

>100_bases
TAACAATAATTATCCAAATAGAAGTCAGTTCTCTTTATTGAGGCTGGCTTTTATTTTGTTAGTAGAAGGATAATAGGATT
TTTAAAGGGCTTATTACTAA

Product: enterotoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGQELKVINTEDGWSKIELNGKEVFVSSEF
TKDVYHVTANLLNVRTEANTDSEILGRLKKDDVIESTHQVKDGWLQFEYKGKTAYANVSFLSSTAPTEKKTEEKTKQVAK
VQKSVKEKKEVKTQKVAKAKETTKAQEIVKPKEEAKVVKVKEEGKAQEIVKPKEEGKAQEIVKPKEEAKVKEEVKVKEEE
KAQEIVKPKEEAKIKEEVKVKEEEKVQEIAKAKEEEKAKAKEEEKAREIVKAKEEEKAREIAKAKEEEKAREIAKAKEEE
KAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKA
KEEERAREIAKAKEEERAKEASKNNIQSAKRELTVVATAYTADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPL
GSKVWVEGYGEAIAGDTGSAIKGNRIDVLMGSKSKAMNWGRQTVKVKIL

Sequences:

>Translated_529_residues
MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGQELKVINTEDGWSKIELNGKEVFVSSEF
TKDVYHVTANLLNVRTEANTDSEILGRLKKDDVIESTHQVKDGWLQFEYKGKTAYANVSFLSSTAPTEKKTEEKTKQVAK
VQKSVKEKKEVKTQKVAKAKETTKAQEIVKPKEEAKVVKVKEEGKAQEIVKPKEEGKAQEIVKPKEEAKVKEEVKVKEEE
KAQEIVKPKEEAKIKEEVKVKEEEKVQEIAKAKEEEKAKAKEEEKAREIVKAKEEEKAREIAKAKEEEKAREIAKAKEEE
KAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKA
KEEERAREIAKAKEEERAKEASKNNIQSAKRELTVVATAYTADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPL
GSKVWVEGYGEAIAGDTGSAIKGNRIDVLMGSKSKAMNWGRQTVKVKIL
>Mature_529_residues
MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGQELKVINTEDGWSKIELNGKEVFVSSEF
TKDVYHVTANLLNVRTEANTDSEILGRLKKDDVIESTHQVKDGWLQFEYKGKTAYANVSFLSSTAPTEKKTEEKTKQVAK
VQKSVKEKKEVKTQKVAKAKETTKAQEIVKPKEEAKVVKVKEEGKAQEIVKPKEEGKAQEIVKPKEEAKVKEEVKVKEEE
KAQEIVKPKEEAKIKEEVKVKEEEKVQEIAKAKEEEKAKAKEEEKAREIVKAKEEEKAREIAKAKEEEKAREIAKAKEEE
KAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKA
KEEERAREIAKAKEEERAKEASKNNIQSAKRELTVVATAYTADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPL
GSKVWVEGYGEAIAGDTGSAIKGNRIDVLMGSKSKAMNWGRQTVKVKIL

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 59127; Mature: 59127

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGQELKVINT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEC
EDGWSKIELNGKEVFVSSEFTKDVYHVTANLLNVRTEANTDSEILGRLKKDDVIESTHQV
CCCCCEEEECCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KDGWLQFEYKGKTAYANVSFLSSTAPTEKKTEEKTKQVAKVQKSVKEKKEVKTQKVAKAK
CCCEEEEEECCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETTKAQEIVKPKEEAKVVKVKEEGKAQEIVKPKEEGKAQEIVKPKEEAKVKEEVKVKEEE
HHHHHHHHHCCHHHCEEEEECCCCCHHHHCCCHHCCCHHHHCCCHHHHHHHHHHHHHHHH
KAQEIVKPKEEAKIKEEVKVKEEEKVQEIAKAKEEEKAKAKEEEKAREIVKAKEEEKARE
HHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEERAREIAKAKEEERAKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASKNNIQSAKRELTVVATAYTADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPL
HHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCEEEEC
GSKVWVEGYGEAIAGDTGSAIKGNRIDVLMGSKSKAMNWGRQTVKVKIL
CCEEEECCCCCHHCCCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEC
>Mature Secondary Structure
MKKVIGAATATVFGLGAFTTTATAETIVTADVLNVREKPTTESKVVEKVKNGQELKVINT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEC
EDGWSKIELNGKEVFVSSEFTKDVYHVTANLLNVRTEANTDSEILGRLKKDDVIESTHQV
CCCCCEEEECCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
KDGWLQFEYKGKTAYANVSFLSSTAPTEKKTEEKTKQVAKVQKSVKEKKEVKTQKVAKAK
CCCEEEEEECCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETTKAQEIVKPKEEAKVVKVKEEGKAQEIVKPKEEGKAQEIVKPKEEAKVKEEVKVKEEE
HHHHHHHHHCCHHHCEEEEECCCCCHHHHCCCHHCCCHHHHCCCHHHHHHHHHHHHHHHH
KAQEIVKPKEEAKIKEEVKVKEEEKVQEIAKAKEEEKAKAKEEEKAREIVKAKEEEKARE
HHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKAKEEEKAREIAKAKEEEKAREIAKAKEEEKAREIAKAKEEERAREIAKAKEEERAKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASKNNIQSAKRELTVVATAYTADPSENGTYGGRVLTAMGHDLTANPNMRIIAVDPKVIPL
HHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCEEEEC
GSKVWVEGYGEAIAGDTGSAIKGNRIDVLMGSKSKAMNWGRQTVKVKIL
CCEEEECCCCCHHCCCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]